Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F1748_RS15985 Genome accession   NZ_CP043821
Coordinates   3203071..3203586 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM10740     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3198071..3208586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1748_RS15960 (F1748_16030) ygaZ 3198470..3199207 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  F1748_RS15965 (F1748_16035) ygaH 3199197..3199532 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  F1748_RS15970 (F1748_16040) emrR 3199623..3200153 (+) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F1748_RS15975 (F1748_16045) emrA 3200280..3201452 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F1748_RS15980 (F1748_16050) emrB 3201469..3203007 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F1748_RS15985 (F1748_16055) luxS 3203071..3203586 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  F1748_RS15990 (F1748_16060) gshA 3203736..3205292 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  F1748_RS15995 (F1748_16065) yqaA 3205365..3205793 (-) 429 WP_001287457.1 YqaA family protein -
  F1748_RS16000 (F1748_16070) yqaB 3205790..3206356 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F1748_RS16030 (F1748_16100) csrA 3207814..3207999 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=338915 F1748_RS15985 WP_001130211.1 3203071..3203586(-) (luxS) [Escherichia coli strain RM10740]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=338915 F1748_RS15985 WP_001130211.1 3203071..3203586(-) (luxS) [Escherichia coli strain RM10740]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731