Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F1748_RS00620 | Genome accession | NZ_CP043821 |
| Coordinates | 141145..141585 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360895.1 | Uniprot ID | B7LFX5 |
| Organism | Escherichia coli strain RM10740 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 136145..146585
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1748_RS00600 (F1748_00605) | aroP | 137143..138516 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| F1748_RS00605 (F1748_00610) | ampE | 138559..139413 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| F1748_RS00610 (F1748_00615) | ampD | 139410..139961 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| F1748_RS00615 (F1748_00620) | nadC | 140049..140942 (+) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| F1748_RS00620 (F1748_00625) | pilA | 141145..141585 (+) | 441 | WP_000360895.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F1748_RS00625 (F1748_00630) | pilB | 141595..142980 (+) | 1386 | WP_001025171.1 | type II secretion system protein GspE | Machinery gene |
| F1748_RS00630 (F1748_00635) | hofC | 142970..144172 (+) | 1203 | WP_000157229.1 | protein transport protein HofC | - |
| F1748_RS00635 (F1748_00640) | guaC | 144207..145250 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| F1748_RS00640 | - | 145406..145450 (-) | 45 | WP_120795372.1 | protein YacM | - |
| F1748_RS00645 (F1748_00645) | coaE | 145475..146095 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15602.71 Da Isoelectric Point: 4.3927
>NTDB_id=338877 F1748_RS00620 WP_000360895.1 141145..141585(+) (pilA) [Escherichia coli strain RM10740]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=338877 F1748_RS00620 WP_000360895.1 141145..141585(+) (pilA) [Escherichia coli strain RM10740]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |