Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EQ249_RS16270 Genome accession   NZ_CP035276
Coordinates   3254574..3255188 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain R17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249574..3260188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ249_RS16255 (EQ249_16255) helD 3249798..3251852 (-) 2055 WP_106107455.1 DNA helicase IV -
  EQ249_RS16260 (EQ249_16260) - 3251978..3252424 (+) 447 WP_003035892.1 YccF domain-containing protein -
  EQ249_RS16265 (EQ249_16265) yccS 3252443..3254596 (+) 2154 WP_106107504.1 YccS family putative transporter -
  EQ249_RS16270 (EQ249_16270) sxy/tfoX 3254574..3255188 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  EQ249_RS16275 (EQ249_16275) sulA 3255406..3255915 (+) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  EQ249_RS16280 (EQ249_16280) ompA 3256273..3257331 (+) 1059 WP_003836839.1 porin OmpA -
  EQ249_RS16285 (EQ249_16285) matP 3257420..3257872 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  EQ249_RS16290 (EQ249_16290) - 3258058..3259818 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=338828 EQ249_RS16270 WP_003035889.1 3254574..3255188(-) (sxy/tfoX) [Citrobacter freundii strain R17]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=338828 EQ249_RS16270 WP_003035889.1 3254574..3255188(-) (sxy/tfoX) [Citrobacter freundii strain R17]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment