Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T12_RS12855 Genome accession   NZ_CP043812
Coordinates   2107538..2108275 (-) Length   245 a.a.
NCBI ID   WP_050303812.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102538..2113275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS10980 (F0T12_12305) - 2103649..2104050 (-) 402 Protein_2133 pilin -
  F0T12_RS10985 (F0T12_12310) lpxC 2104178..2105101 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T12_RS13095 pilE 2105810..2105965 (-) 156 WP_419692603.1 hypothetical protein Machinery gene
  F0T12_RS12965 - 2106047..2106274 (+) 228 WP_336604526.1 hypothetical protein -
  F0T12_RS11000 (F0T12_12330) - 2106568..2106801 (-) 234 WP_164824784.1 hypothetical protein -
  F0T12_RS11005 (F0T12_12335) pilE 2107101..2107520 (-) 420 WP_164824795.1 pilin Machinery gene
  F0T12_RS12855 (F0T12_12340) pilE 2107538..2108275 (-) 738 WP_050303812.1 pilin Machinery gene
  F0T12_RS11015 (F0T12_12345) pilE 2108304..2108735 (-) 432 WP_164824785.1 pilin Machinery gene
  F0T12_RS11020 (F0T12_12355) - 2108831..2109220 (-) 390 Protein_2141 pilin -
  F0T12_RS11025 (F0T12_12370) - 2110019..2110144 (+) 126 Protein_2142 IS110 family transposase -
  F0T12_RS11030 (F0T12_12385) - 2110693..2111382 (-) 690 WP_050157270.1 SprT family zinc-dependent metalloprotease -
  F0T12_RS11035 (F0T12_12390) - 2111379..2112122 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  F0T12_RS11040 (F0T12_12395) gmhB 2112152..2112715 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26683.82 Da        Isoelectric Point: 9.2812

>NTDB_id=338804 F0T12_RS12855 WP_050303812.1 2107538..2108275(-) (pilE) [Neisseria gonorrhoeae strain NG290]
MSHHRVLPSAVTEYYPNHGKWPEDNTSAGVASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGS
VKWFCGQPVTRANADAAKDDVNAAKDTNKIETKHLPSTCRDESSAGCTKTPEYYLNHGTWPEDNTSAGVASSAEIKGKYV
QKVEVAKGVVTATMKSDGVNKEIKGKKLSLWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRD
TSSAK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=338804 F0T12_RS12855 WP_050303812.1 2107538..2108275(-) (pilE) [Neisseria gonorrhoeae strain NG290]
ATCAGCCATCACCGGGTATTACCCTCAGCCGTCACCGAATATTACCCGAATCACGGCAAATGGCCGGAAGACAACACTTC
TGCCGGCGTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCG
CCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCG
GTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACAC
CAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATT
ACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTT
CAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAA
ACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAG
CCGACAACGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGAT
ACGTCATCTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(9-120)

Pilin (bacterial filament) (Pilin)

(128-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.068

47.755

0.363