Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EQZ96_RS07085 Genome accession   NZ_CP035267
Coordinates   1538142..1539956 (-) Length   604 a.a.
NCBI ID   WP_128735989.1    Uniprot ID   -
Organism   Weissella cibaria strain SRCM103448     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533142..1544956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ96_RS07060 (EQZ96_07060) - 1533639..1534739 (-) 1101 WP_128735987.1 Xaa-Pro peptidase family protein -
  EQZ96_RS07065 (EQZ96_07065) ccpA 1534991..1535992 (+) 1002 WP_010373031.1 catabolite control protein A -
  EQZ96_RS07070 (EQZ96_07070) - 1536051..1536623 (-) 573 WP_010372524.1 hypothetical protein -
  EQZ96_RS07075 (EQZ96_07075) - 1536639..1537028 (-) 390 WP_010372520.1 DUF948 domain-containing protein -
  EQZ96_RS07080 (EQZ96_07080) - 1537336..1538055 (+) 720 WP_128735988.1 MIP/aquaporin family protein -
  EQZ96_RS07085 (EQZ96_07085) pepF 1538142..1539956 (-) 1815 WP_128735989.1 oligoendopeptidase F Regulator
  EQZ96_RS07090 (EQZ96_07090) - 1539996..1541030 (-) 1035 WP_128735990.1 competence protein CoiA family protein -
  EQZ96_RS07095 (EQZ96_07095) - 1541132..1542496 (-) 1365 WP_128735991.1 PTS sugar transporter subunit IIC -
  EQZ96_RS07100 (EQZ96_07100) - 1542563..1544014 (-) 1452 Protein_1372 6-phospho-beta-glucosidase -
  EQZ96_RS07105 (EQZ96_07105) - 1544020..1544343 (-) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  EQZ96_RS07110 (EQZ96_07110) - 1544389..1544706 (-) 318 WP_010372498.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67722.54 Da        Isoelectric Point: 4.2766

>NTDB_id=338783 EQZ96_RS07085 WP_128735989.1 1538142..1539956(-) (pepF) [Weissella cibaria strain SRCM103448]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=338783 EQZ96_RS07085 WP_128735989.1 1538142..1539956(-) (pepF) [Weissella cibaria strain SRCM103448]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGCCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGATTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
GGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTGTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGGGCGTACAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGGGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGCCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTGAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCGGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523

Multiple sequence alignment