Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EQZ51_RS01860 Genome accession   NZ_CP035266
Coordinates   386165..387535 (+) Length   456 a.a.
NCBI ID   WP_002832361.1    Uniprot ID   A0AAN5Y9S9
Organism   Pediococcus acidilactici strain SRCM103444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 381165..392535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ51_RS01830 (EQZ51_01830) - 381925..382596 (+) 672 WP_075140186.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  EQZ51_RS01840 (EQZ51_01840) - 382991..384337 (-) 1347 WP_002832366.1 C1 family peptidase -
  EQZ51_RS01845 (EQZ51_01845) rpiA 384386..385072 (-) 687 WP_075140185.1 ribose-5-phosphate isomerase RpiA -
  EQZ51_RS01850 (EQZ51_01850) - 385083..385406 (-) 324 WP_128736886.1 GNAT family N-acetyltransferase -
  EQZ51_RS01855 (EQZ51_01855) - 385535..386071 (+) 537 WP_005921602.1 dUTP diphosphatase dut -
  EQZ51_RS01860 (EQZ51_01860) radA 386165..387535 (+) 1371 WP_002832361.1 DNA repair protein RadA Machinery gene
  EQZ51_RS01865 (EQZ51_01865) - 387651..388799 (+) 1149 WP_128736887.1 PIN/TRAM domain-containing protein -
  EQZ51_RS01870 (EQZ51_01870) gltX 388924..390411 (+) 1488 WP_002832359.1 glutamate--tRNA ligase -
  EQZ51_RS01875 (EQZ51_01875) cysS 390568..391986 (+) 1419 WP_128736888.1 cysteine--tRNA ligase -
  EQZ51_RS01880 (EQZ51_01880) - 391979..392392 (+) 414 WP_004165556.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50252.79 Da        Isoelectric Point: 7.4153

>NTDB_id=338749 EQZ51_RS01860 WP_002832361.1 386165..387535(+) (radA) [Pediococcus acidilactici strain SRCM103444]
MAKVKTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQLISDVAMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAETQRKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRA
VIEELHPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLKDASGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRILIPKNNLKGWQPPEGIEVVGVATIADAIRRAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=338749 EQZ51_RS01860 WP_002832361.1 386165..387535(+) (radA) [Pediococcus acidilactici strain SRCM103444]
ATGGCAAAAGTTAAGACCCAGTTTGTATGCAATAATTGCGGATACGCCTCCCCTAAATTTTTAGGACGCTGTCCCAATTG
TGGTAAGTGGAACACTTTAGTTGAAGAACGGATGAGTGACCCGAAGGCTGAACGAAAAAGCCGGGTGAGCTTTGACGGCA
AACATACGCAACCGCAGCTGATTTCGGACGTCGCGATGCACGAGGAACCCCGGGTAAAAACTGGGATGGAAGAACTTAAC
CGCGTGCTTGGTGGCGGGGTGGTTGACGGCTCCCTAGTCTTAATTGGTGGGGATCCTGGGATCGGAAAATCAACCCTGTT
GTTACAGCTATCAGGACAGTTGGCAGAGACGCAACGCAAGGTGCTTTACGTTTCTGGTGAAGAAAGTGCTTCCCAGATTA
AGATGCGTGCCGAACGCTTGAAAGTCAATAGTGAACGCTTCTATTTGTATCCAGAGACGGATATGTCTAGCGTGCGGGCG
GTGATTGAGGAATTGCACCCCGAGTACGTGATCATTGATTCGGTTCAGACCATGCAGGAACCGGATATTGAATCGGCGGT
GGGGAGCGTTTCTCAAATTCGAGAAATTACCGCAGAATTAATGCAAATCGCGAAAACCAATAACATTACCATCTTCATCG
TTGGTCACGTGACCAAGGGCGGCGCAATTGCGGGGCCGAAGATTTTGGAACACATGGTGGATACGGTACTTTACTTTGAA
GGCGATCTGCACCACACTTACCGAATCTTGCGAGCGGTGAAGAATCGGTTTGGTTCCACGAACGAATTAGGAATCTTTGA
GATGCGCGAAGAAGGGTTACGCGAGGTGGCTAACCCGTCAGAAATTTTCTTAGAAGAGCGTTTAAAAGATGCTTCGGGAT
CGGCAATTGTAGTTTCAATGGAAGGAACTCGGCCGATTTTAGTTGAAATACAAGCCTTGATCACGCCCACCATCTTTGGT
AATGCGCAGCGCACGGCGAGCGGGTTGGACCGCAACCGAGTTTCGCTGATCATGGCGGTGCTCGAAAAACGGGCAAAGCT
CACTTTGCAAAACCAAGACGCCTATTTAAAGGCGGCGGGCGGCGTCAAGCTTGACGAACCTGCAATTGACTTAGCGTTGG
CGATTAGTATTGTTTCAAGTTTTAAAAATCAGGGAACCCGGCCGACCGATAGTTTTGTTGGTGAAATCGGATTAACTGGT
GAAATTCGGCGGGTTAACCGAATTGAACAACGGGTCGCTGAAGCACAAAAGCTTGGTTTTAAGCGGATTTTGATTCCGAA
GAATAATTTAAAGGGGTGGCAGCCCCCCGAAGGAATTGAAGTTGTAGGGGTAGCTACGATTGCCGACGCGATTCGGCGGG
CATTTAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.033

99.781

0.669
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654

Multiple sequence alignment