Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F1539_RS07480 Genome accession   NZ_CP043772
Coordinates   1468652..1469155 (+) Length   167 a.a.
NCBI ID   WP_011272085.1    Uniprot ID   Q4QN52
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463652..1474155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS07440 (F1539_07445) atpF 1463993..1464463 (-) 471 WP_005629246.1 F0F1 ATP synthase subunit B -
  F1539_RS07445 (F1539_07450) atpE 1464513..1464767 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  F1539_RS07450 (F1539_07455) atpB 1464823..1465611 (-) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  F1539_RS07455 (F1539_07460) - 1465648..1466022 (-) 375 WP_013526440.1 ATP synthase subunit I -
  F1539_RS07460 (F1539_07465) rsmG 1466148..1466759 (-) 612 WP_005659754.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  F1539_RS07465 (F1539_07470) - 1466899..1467276 (-) 378 WP_005691328.1 PRD domain-containing protein -
  F1539_RS07470 (F1539_07475) - 1467392..1467994 (+) 603 WP_013526439.1 beta-phosphoglucomutase family hydrolase -
  F1539_RS07475 (F1539_07480) - 1467994..1468467 (+) 474 WP_005691326.1 YqaA family protein -
  F1539_RS07480 (F1539_07485) luxS 1468652..1469155 (+) 504 WP_011272085.1 S-ribosylhomocysteine lyase Regulator
  F1539_RS10605 - 1469462..1469656 (+) 195 WP_406808526.1 hypothetical protein -
  F1539_RS10610 - 1469842..1470009 (+) 168 WP_406808527.1 IS3 family transposase -
  F1539_RS10615 - 1469941..1470104 (+) 164 Protein_1456 IS3 family transposase -
  F1539_RS07490 (F1539_07495) aphA 1470101..1470808 (-) 708 WP_005649426.1 acid phosphatase AphA -
  F1539_RS07495 (F1539_07500) hslV 1471030..1471557 (+) 528 WP_005656555.1 ATP-dependent protease subunit HslV -
  F1539_RS07500 (F1539_07505) hslU 1471568..1472902 (+) 1335 WP_013526437.1 HslU--HslV peptidase ATPase subunit -
  F1539_RS07505 (F1539_07510) - 1472972..1474024 (-) 1053 WP_013526436.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18518.17 Da        Isoelectric Point: 4.8168

>NTDB_id=338713 F1539_RS07480 WP_011272085.1 1468652..1469155(+) (luxS) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MPLLDSFKVDHTKMNAPAVRIAKTMCTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=338713 F1539_RS07480 WP_011272085.1 1468652..1469155(+) (luxS) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGTGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QN52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737