Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F1538_RS07815 Genome accession   NZ_CP043771
Coordinates   1564431..1565033 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559431..1570033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS07795 (F1538_07805) - 1559804..1561474 (+) 1671 WP_013526468.1 fructose-specific PTS transporter subunit EIIC -
  F1538_RS07805 (F1538_07815) secG 1562011..1562352 (-) 342 WP_005669259.1 preprotein translocase subunit SecG -
  F1538_RS07810 (F1538_07820) - 1562460..1564415 (-) 1956 WP_013526469.1 DNA topoisomerase III -
  F1538_RS07815 (F1538_07825) recR 1564431..1565033 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  F1538_RS07820 (F1538_07830) - 1565164..1565493 (-) 330 WP_013526470.1 YbaB/EbfC family nucleoid-associated protein -
  F1538_RS07825 (F1538_07835) - 1565645..1566490 (-) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  F1538_RS07830 (F1538_07840) - 1566563..1569163 (-) 2601 WP_013526472.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=338653 F1538_RS07815 WP_005626527.1 1564431..1565033(-) (recR) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=338653 F1538_RS07815 WP_005626527.1 1564431..1565033(-) (recR) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCGACGGTGGAGGGCGATGCGACGGCAAACTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACACTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment