Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   F1538_RS06235 Genome accession   NZ_CP043771
Coordinates   1246859..1248718 (-) Length   619 a.a.
NCBI ID   WP_006995390.1    Uniprot ID   A0ABY1VRW2
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241859..1253718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS06225 (F1538_06235) lptD 1242620..1244968 (+) 2349 WP_013526306.1 LPS assembly protein LptD -
  F1538_RS06230 (F1538_06240) proS 1245056..1246774 (-) 1719 WP_006995391.1 proline--tRNA ligase -
  F1538_RS06235 (F1538_06245) recQ 1246859..1248718 (-) 1860 WP_006995390.1 DNA helicase RecQ Machinery gene
  F1538_RS06240 (F1538_06250) cyaY 1248720..1249025 (-) 306 WP_005655473.1 iron donor protein CyaY -
  F1538_RS10360 - 1249122..1249238 (+) 117 WP_012055197.1 LPS translocon maturation chaperone LptM -
  F1538_RS06245 (F1538_06255) lysA 1249286..1250533 (+) 1248 WP_013526307.1 diaminopimelate decarboxylase -
  F1538_RS06250 (F1538_06260) - 1250739..1251365 (+) 627 WP_005652269.1 response regulator -
  F1538_RS06255 (F1538_06265) - 1251427..1251867 (-) 441 WP_013526308.1 DUF2489 domain-containing protein -
  F1538_RS06260 (F1538_06270) yihI 1251871..1252431 (-) 561 WP_013526309.1 Der GTPase-activating protein YihI -
  F1538_RS06265 (F1538_06275) - 1252545..1252823 (-) 279 WP_006995387.1 hypothetical protein -
  F1538_RS10190 - 1252856..1253029 (-) 174 WP_006995386.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70105.56 Da        Isoelectric Point: 8.0144

>NTDB_id=338641 F1538_RS06235 WP_006995390.1 1246859..1248718(-) (recQ) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAMLRGMHNQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=338641 F1538_RS06235 WP_006995390.1 1246859..1248718(-) (recQ) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTTGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCTATGGAGCAACTGACACGTTTTGTGTTGGCTCAAAAGGGTAAG
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCATGCGGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGCGATGATTTACCCGCAGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTATGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGTCGTTTAGTTCTTCTCAATTATTTTGGTGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGACAATGTTTTGGTGCACATTATGTGATTGCGATGTTGCGTGGCATGCACAATCAGAAAATTATTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGCAAAGAGCATTGGCAGTCTGTTATTCGTCAACTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAGATTGCCCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACTTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

DEAD/DEAH box helicase (DEAD)

(32-191)

RQC domain (RQC)

(409-518)

HRDC domain (HRDC)

(539-605)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.262

96.284

0.378

Multiple sequence alignment