Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F1537_RS08400 Genome accession   NZ_CP043770
Coordinates   1647428..1648630 (+) Length   400 a.a.
NCBI ID   WP_032826258.1    Uniprot ID   A0ABY1VRL5
Organism   Haemophilus influenzae biotype aegyptius strain HE7/F1946     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642428..1653630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1537_RS08370 (F1537_08380) - 1642537..1643217 (-) 681 WP_005648472.1 metallophosphoesterase -
  F1537_RS08375 (F1537_08385) nadR 1643214..1644437 (-) 1224 WP_013526289.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  F1537_RS08380 (F1537_08390) ribB 1644698..1645345 (+) 648 WP_005666218.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  F1537_RS08385 (F1537_08395) - 1645372..1646208 (+) 837 WP_041174971.1 glycosyltransferase family 25 protein -
  F1537_RS08390 (F1537_08400) trmL 1646257..1646739 (-) 483 WP_005666214.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  F1537_RS08395 (F1537_08405) rsmD 1646750..1647331 (-) 582 WP_006995466.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F1537_RS08400 (F1537_08410) pilA 1647428..1648630 (+) 1203 WP_032826258.1 signal recognition particle-docking protein FtsY Machinery gene
  F1537_RS08405 (F1537_08415) ftsE 1648649..1649305 (+) 657 WP_005648452.1 cell division ATP-binding protein FtsE -
  F1537_RS08410 (F1537_08420) ftsX 1649315..1650247 (+) 933 WP_013526287.1 permease-like cell division protein FtsX -
  F1537_RS08415 (F1537_08425) rpsJ 1650567..1650878 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  F1537_RS08420 (F1537_08430) rplC 1650895..1651521 (+) 627 WP_005632753.1 50S ribosomal protein L3 -
  F1537_RS08425 (F1537_08435) rplD 1651537..1652139 (+) 603 WP_005652369.1 50S ribosomal protein L4 -
  F1537_RS08430 (F1537_08440) rplW 1652136..1652435 (+) 300 WP_005632756.1 50S ribosomal protein L23 -
  F1537_RS08435 (F1537_08445) rplB 1652453..1653274 (+) 822 WP_005652371.1 50S ribosomal protein L2 -
  F1537_RS08440 (F1537_08450) rpsS 1653300..1653575 (+) 276 WP_005539416.1 30S ribosomal protein S19 -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44372.76 Da        Isoelectric Point: 4.6166

>NTDB_id=338598 F1537_RS08400 WP_032826258.1 1647428..1648630(+) (pilA) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MAEENKKGGFWASLFGRNKKQDEPKIEPIIEEEKIKDIESSIEKFETHDLVEEEKIQEISTALEAVEEIIEAKKLEDDLQ
PVAEIETREKPSEGGFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTEHASRK
ELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVE
QLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLT
LDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALFVHEEE

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=338598 F1537_RS08400 WP_032826258.1 1647428..1648630(+) (pilA) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
ATGGCTGAAGAAAATAAAAAAGGCGGATTTTGGGCATCATTATTTGGGCGTAATAAAAAGCAAGATGAACCTAAAATTGA
GCCGATAATTGAAGAAGAAAAGATAAAAGATATCGAGTCGTCTATTGAAAAATTTGAAACTCATGATTTAGTCGAAGAAG
AAAAAATACAGGAAATTTCAACCGCACTTGAGGCAGTCGAAGAAATCATCGAAGCGAAAAAGTTAGAAGATGATCTTCAG
CCTGTTGCTGAAATTGAAACTCGCGAAAAACCAAGTGAAGGGGGCTTTTTTAGTCGTTTAGTTAAGGGATTACTGAAAAC
TAAACAAAATATTGGCGCGGGTTTTCGTGGTTTTTTCTTAGGAAAGAAAATCGATGATGAGTTGTTTGAAGAATTAGAAG
AACAACTTTTGATTGCGGATATTGGCGTGCCGACAACAAGTAAAATTATCAAAAATTTGACTGAACATGCAAGTCGCAAA
GAATTACAAGATGCCGAGCTTTTATATCAACAATTAAAAGTAGAAATGGCGGATATTCTTGAGCCAGTAGCACAACCTTT
AGAGATTGATAGCACGAAAAAACCTTATGTGATTTTAATGGTGGGCGTAAATGGCGTGGGTAAAACAACGACAATTGGTA
AGCTTGCACGTAAATTTCAGGCTGAAGGAAAATCAGTGATGCTCGCAGCAGGTGATACTTTCCGCGCAGCGGCTGTTGAG
CAGCTTCAAGTTTGGGGAGAACGCAATCATATTCCAGTTGTTGCGCAAAGCACGGGTTCTGATTCTGCGTCTGTGATTTT
TGATGCGATGCAATCAGCGGCTGCACGCAATATTGATATTCTTATTGCGGATACGGCGGGTCGTTTACAAAATAAAAATA
ACTTAATGGACGAACTGAAAAAAATTGTTCGTGTTATGAAAAAATATGATGAAACTGCGCCACATGAAATTATGCTTACG
CTGGATGCTGGTACGGGACAAAATGCTATTAGCCAAGCGAAGTTATTTAATGAGGCTGTGGGTTTAACAGGAATCTCTCT
AACAAAATTAGATGGCACGGCAAAAGGCGGTGTGATTTTTGCCATAGCCGATCAGTTTAAGTTGCCTATTCGCTATATCG
GTGTAGGCGAGAAAATTGAAGATTTACGTGAGTTTAATGCGAAAGAATTTATTGAGGCATTATTCGTTCATGAAGAAGAA
TAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(196-395)

SRP54-type protein, helical bundle domain (SRP54_N)

(113-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.75

100

0.455