Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EQH16_RS00410 Genome accession   NZ_CP035264
Coordinates   61226..62587 (+) Length   453 a.a.
NCBI ID   WP_075213698.1    Uniprot ID   A0A7X2XL61
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56226..67587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS11160 (EQH16_00355) - 56333..56449 (+) 117 WP_001063633.1 hypothetical protein -
  EQH16_RS00355 (EQH16_00360) - 56430..56633 (+) 204 WP_001091118.1 hypothetical protein -
  EQH16_RS00360 (EQH16_00365) - 56636..56986 (+) 351 WP_000852248.1 hypothetical protein -
  EQH16_RS00365 (EQH16_00370) - 56996..57412 (+) 417 WP_001165341.1 phage holin family protein -
  EQH16_RS00370 (EQH16_00375) - 57416..57748 (+) 333 WP_001186228.1 phage holin -
  EQH16_RS00375 (EQH16_00380) - 57752..58708 (+) 957 WP_050197950.1 N-acetylmuramoyl-L-alanine amidase -
  EQH16_RS00380 (EQH16_00385) - 58846..59025 (-) 180 WP_001209433.1 hypothetical protein -
  EQH16_RS00385 - 59167..59316 (-) 150 WP_001030863.1 hypothetical protein -
  EQH16_RS00390 (EQH16_00390) tadA 59598..60065 (+) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  EQH16_RS00400 (EQH16_00400) - 60252..60695 (+) 444 WP_000701992.1 dUTP diphosphatase -
  EQH16_RS00405 (EQH16_00405) - 60697..61212 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  EQH16_RS00410 (EQH16_00410) radA 61226..62587 (+) 1362 WP_075213698.1 DNA repair protein RadA Machinery gene
  EQH16_RS00415 (EQH16_00415) - 62660..63157 (+) 498 WP_001809263.1 carbonic anhydrase -
  EQH16_RS00420 (EQH16_00420) - 63182..63965 (+) 784 Protein_77 PrsW family glutamic-type intramembrane protease -
  EQH16_RS00425 (EQH16_00425) - 64110..65078 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  EQH16_RS00430 (EQH16_00430) - 65212..65493 (-) 282 Protein_79 ISL3 family transposase -
  EQH16_RS00435 - 65620..66527 (-) 908 Protein_80 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49432.91 Da        Isoelectric Point: 6.1868

>NTDB_id=338593 EQH16_RS00410 WP_075213698.1 61226..62587(+) (radA) [Streptococcus pneumoniae strain TVO_1901921]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPQNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=338593 EQH16_RS00410 WP_075213698.1 61226..62587(+) (radA) [Streptococcus pneumoniae strain TVO_1901921]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTCAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTCTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.779

100

0.998
  radA Streptococcus pneumoniae D39

99.779

100

0.998
  radA Streptococcus pneumoniae R6

99.779

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.779

100

0.998
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.338

100

0.993
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment