Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F1537_RS06845 Genome accession   NZ_CP043770
Coordinates   1330320..1330823 (+) Length   167 a.a.
NCBI ID   WP_011272085.1    Uniprot ID   Q4QN52
Organism   Haemophilus influenzae biotype aegyptius strain HE7/F1946     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325320..1335823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1537_RS06805 (F1537_06815) atpF 1325661..1326131 (-) 471 WP_005629246.1 F0F1 ATP synthase subunit B -
  F1537_RS06810 (F1537_06820) atpE 1326181..1326435 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  F1537_RS06815 (F1537_06825) atpB 1326491..1327279 (-) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  F1537_RS06820 (F1537_06830) - 1327316..1327690 (-) 375 WP_013526440.1 ATP synthase subunit I -
  F1537_RS06825 (F1537_06835) rsmG 1327816..1328427 (-) 612 WP_005659754.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  F1537_RS06830 (F1537_06840) - 1328567..1328944 (-) 378 WP_005691328.1 PRD domain-containing protein -
  F1537_RS06835 (F1537_06845) - 1329060..1329662 (+) 603 WP_013526439.1 beta-phosphoglucomutase family hydrolase -
  F1537_RS06840 (F1537_06850) - 1329662..1330135 (+) 474 WP_005691326.1 YqaA family protein -
  F1537_RS06845 (F1537_06855) luxS 1330320..1330823 (+) 504 WP_011272085.1 S-ribosylhomocysteine lyase Regulator
  F1537_RS10655 - 1331130..1331324 (+) 195 WP_406808526.1 hypothetical protein -
  F1537_RS10660 - 1331510..1331677 (+) 168 WP_406808527.1 IS3 family transposase -
  F1537_RS10665 - 1331609..1331772 (+) 164 Protein_1328 IS3 family transposase -
  F1537_RS06855 (F1537_06865) aphA 1331769..1332476 (-) 708 WP_005649426.1 acid phosphatase AphA -
  F1537_RS06860 (F1537_06870) hslV 1332698..1333225 (+) 528 WP_005656555.1 ATP-dependent protease subunit HslV -
  F1537_RS06865 (F1537_06875) hslU 1333236..1334570 (+) 1335 WP_013526437.1 HslU--HslV peptidase ATPase subunit -
  F1537_RS06870 (F1537_06880) - 1334640..1335692 (-) 1053 WP_013526436.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18518.17 Da        Isoelectric Point: 4.8168

>NTDB_id=338588 F1537_RS06845 WP_011272085.1 1330320..1330823(+) (luxS) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
MPLLDSFKVDHTKMNAPAVRIAKTMCTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=338588 F1537_RS06845 WP_011272085.1 1330320..1330823(+) (luxS) [Haemophilus influenzae biotype aegyptius strain HE7/F1946]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGTGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QN52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment