Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EQH17_RS08605 Genome accession   NZ_CP035263
Coordinates   1744805..1745731 (-) Length   308 a.a.
NCBI ID   WP_000103697.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739805..1750731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS08585 (EQH17_09105) treR 1740526..1741236 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH17_RS08590 (EQH17_09115) - 1741391..1742717 (+) 1327 Protein_1724 ISL3 family transposase -
  EQH17_RS08595 (EQH17_09120) amiF 1742792..1743718 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH17_RS08600 (EQH17_09125) amiE 1743729..1744796 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQH17_RS08605 (EQH17_09130) amiD 1744805..1745731 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  EQH17_RS08610 (EQH17_09135) amiC 1745731..1747227 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  EQH17_RS08615 (EQH17_09140) amiA3 1747294..1749273 (-) 1980 WP_000742232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34648.79 Da        Isoelectric Point: 9.7939

>NTDB_id=338552 EQH17_RS08605 WP_000103697.1 1744805..1745731(-) (amiD) [Streptococcus pneumoniae strain TVO_1901922]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSIR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=338552 EQH17_RS08605 WP_000103697.1 1744805..1745731(-) (amiD) [Streptococcus pneumoniae strain TVO_1901922]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTATTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATCGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment