Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FZN58_RS05955 Genome accession   NZ_CP043763
Coordinates   1149417..1150283 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144417..1155283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS05935 (FZN58_05935) metF 1146270..1147118 (+) 849 WP_044258545.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  FZN58_RS05940 (FZN58_05940) - 1147140..1147331 (-) 192 WP_002914249.1 membrane protein -
  FZN58_RS05945 (FZN58_05945) atpB 1147328..1148008 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  FZN58_RS05950 (FZN58_05950) radA 1148077..1149417 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  FZN58_RS05955 (FZN58_05955) pilA 1149417..1150283 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  FZN58_RS05960 (FZN58_05960) - 1150283..1150840 (-) 558 WP_149831527.1 TlpA disulfide reductase family protein -
  FZN58_RS05965 (FZN58_05965) - 1150923..1151549 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  FZN58_RS05970 (FZN58_05970) rny 1151470..1153023 (+) 1554 WP_002869639.1 ribonuclease Y -
  FZN58_RS05975 (FZN58_05975) - 1153032..1153589 (+) 558 WP_002852823.1 DedA family protein -
  FZN58_RS05980 (FZN58_05980) - 1153589..1154848 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=338528 FZN58_RS05955 WP_002852840.1 1149417..1150283(-) (pilA) [Campylobacter jejuni strain BfR-CA-14430]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=338528 FZN58_RS05955 WP_002852840.1 1149417..1150283(-) (pilA) [Campylobacter jejuni strain BfR-CA-14430]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434

Multiple sequence alignment