Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FZN58_RS05915 Genome accession   NZ_CP043763
Coordinates   1141406..1141900 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136406..1146900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS05900 (FZN58_05900) - 1137792..1138970 (-) 1179 WP_002905840.1 metal-dependent hydrolase -
  FZN58_RS05905 (FZN58_05905) gpsA 1138980..1139876 (-) 897 WP_079676345.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FZN58_RS05910 (FZN58_05910) gatB 1139873..1141291 (-) 1419 WP_002859278.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FZN58_RS05915 (FZN58_05915) luxS 1141406..1141900 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  FZN58_RS05920 (FZN58_05920) - 1142211..1143203 (+) 993 WP_057041295.1 isopenicillin N synthase family oxygenase -
  FZN58_RS05925 (FZN58_05925) - 1143214..1143984 (+) 771 WP_057041296.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  FZN58_RS05930 (FZN58_05930) metE 1143996..1146260 (+) 2265 WP_002887822.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=338526 FZN58_RS05915 WP_002860433.1 1141406..1141900(+) (luxS) [Campylobacter jejuni strain BfR-CA-14430]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=338526 FZN58_RS05915 WP_002860433.1 1141406..1141900(+) (luxS) [Campylobacter jejuni strain BfR-CA-14430]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment