Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   F1D59_RS12240 Genome accession   NZ_CP043638
Coordinates   2813031..2814014 (-) Length   327 a.a.
NCBI ID   WP_030664292.1    Uniprot ID   A0ABQ3NDY1
Organism   Streptomyces sp. INR7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2808031..2819014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS12220 (F1D59_12280) - 2810057..2810440 (-) 384 WP_053627262.1 DUF6113 family protein -
  F1D59_RS12225 (F1D59_12285) mshB 2810437..2811333 (-) 897 WP_053613296.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  F1D59_RS12230 (F1D59_12290) - 2811419..2811613 (-) 195 WP_030036986.1 hypothetical protein -
  F1D59_RS12235 (F1D59_12295) - 2811974..2813038 (-) 1065 WP_030664288.1 ABC transporter ATP-binding protein -
  F1D59_RS12240 (F1D59_12300) amiE 2813031..2814014 (-) 984 WP_030664292.1 ABC transporter ATP-binding protein Regulator
  F1D59_RS12245 (F1D59_12305) - 2814027..2814953 (-) 927 WP_185559666.1 ABC transporter permease -
  F1D59_RS12250 (F1D59_12310) - 2815039..2815962 (-) 924 WP_030664301.1 ABC transporter permease -
  F1D59_RS12255 (F1D59_12315) - 2816033..2817664 (-) 1632 WP_053613297.1 ABC transporter substrate-binding protein -
  F1D59_RS12260 (F1D59_12320) - 2817772..2818698 (-) 927 WP_125540085.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35782.61 Da        Isoelectric Point: 6.7635

>NTDB_id=338450 F1D59_RS12240 WP_030664292.1 2813031..2814014(-) (amiE) [Streptomyces sp. INR7]
MLLEVRDLHVEFKTRDGVAKAVNGVHYSVDEGETLAVLGESGSGKSVTAQAVMGILDVPPGRIAGGEILFKGRDLLKMKE
DERRRIRGAEMAMIFQDALSSLNPVLTVGAQLGEMYEVHRGTSRKEARAKAVELMDRVRIPAAKQRVGDYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVEAAPVHE
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLRIPPGCAFNPRCPMAQEVCRSDVPPLYPVTESPVPRASACHF
WKECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=338450 F1D59_RS12240 WP_030664292.1 2813031..2814014(-) (amiE) [Streptomyces sp. INR7]
ATGCTGCTCGAGGTCCGCGACCTGCACGTGGAATTCAAGACGCGCGACGGAGTCGCGAAAGCGGTCAACGGAGTCCACTA
CTCGGTGGACGAGGGCGAGACGCTCGCGGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCCCAGGCCGTGATGG
GGATCCTGGACGTCCCGCCGGGCCGGATCGCCGGCGGCGAGATCCTCTTCAAGGGCCGCGACCTGCTGAAGATGAAGGAG
GACGAACGGCGCAGGATCCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCCTCAACCCGGTGCTGAC
CGTCGGCGCCCAGCTCGGCGAGATGTACGAGGTCCACCGCGGCACGTCCCGCAAGGAGGCCCGGGCCAAGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCCGCGGCCAAACAGCGGGTGGGGGACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCCCTGGAGCCCTCGCTGATCATCGCGGACGAGCCGACGACCGCCCTGGACGTCAC
CGTCCAGGCACAGGTGATGGACCTCTTGGCCGAGCTCCAGCGGGAGCTCAACATGGGCCTCATCCTGATCACCCACGACC
TCGGCGTGGTCGCGGACGTCGCCGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGGCGGCACCCGTCCACGAG
ATCTACAAGGCGCCCGCGCACCCGTACACGCGCGGCCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTGCTCCGCATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCGC
AGGAGGTCTGCCGCAGCGACGTCCCACCGCTGTACCCGGTGACGGAGTCGCCCGTGCCGCGGGCCAGCGCCTGCCACTTC
TGGAAGGAGTGCCTCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.125

97.859

0.471
  amiE Streptococcus thermophilus LMG 18311

47.812

97.859

0.468
  amiE Streptococcus thermophilus LMD-9

47.812

97.859

0.468
  oppD Streptococcus mutans UA159

47.896

94.495

0.453