Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F1D59_RS09955 Genome accession   NZ_CP043638
Coordinates   2323106..2324320 (-) Length   404 a.a.
NCBI ID   WP_030650910.1    Uniprot ID   A0ABQ3NFA9
Organism   Streptomyces sp. INR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318106..2329320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS09935 (F1D59_09985) - 2318394..2318732 (-) 339 WP_030650922.1 P-II family nitrogen regulator -
  F1D59_RS09940 (F1D59_09990) - 2318729..2320069 (-) 1341 WP_030650919.1 ammonium transporter -
  F1D59_RS09945 (F1D59_09995) - 2320426..2321916 (-) 1491 WP_030650916.1 tetratricopeptide repeat protein -
  F1D59_RS09950 (F1D59_10000) - 2322365..2323033 (+) 669 WP_030650913.1 bifunctional DNA primase/polymerase -
  F1D59_RS09955 (F1D59_10005) pilA 2323106..2324320 (-) 1215 WP_030650910.1 signal recognition particle-docking protein FtsY Machinery gene
  F1D59_RS09960 (F1D59_10010) - 2324462..2325922 (+) 1461 WP_053611758.1 cytosine permease -
  F1D59_RS09965 (F1D59_10015) - 2325985..2326971 (+) 987 WP_030650904.1 LLM class flavin-dependent oxidoreductase -
  F1D59_RS09970 (F1D59_10020) - 2327013..2328446 (-) 1434 WP_030650901.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 42330.54 Da        Isoelectric Point: 4.4045

>NTDB_id=338441 F1D59_RS09955 WP_030650910.1 2323106..2324320(-) (pilA) [Streptomyces sp. INR7]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPPAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAPAAA
PVVVEPEVPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVERL
RERVKVLGTRTPADLRALLKEELLTLVGTDLDRVVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAA
DTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP
LDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDA
LIGD

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=338441 F1D59_RS09955 WP_030650910.1 2323106..2324320(-) (pilA) [Streptomyces sp. INR7]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGTGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCCCGGCACCGCCGAGCACGCCGACCATCACTGCCCCGCCTGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGGACTCCCGGAGGCCGAGGCTCCCGCCGCGGCG
CCCGTCGTCGTCGAGCCCGAGGTCCCGGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTCCGGCT
GCGCGCCCGCCTCGCCCGGTCGCAGAACTCCCTCGGCAAGGGGCTGCTGACGCTGCTCTCGCGCGAGCACCTCGACGAGG
ACACCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGCGTCGTGCCGACCCAGGAGCTCGTCGAGCGCCTC
CGCGAGCGGGTCAAGGTCCTCGGCACCCGCACCCCGGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCTGGT
CGGCACCGACCTCGACCGCGTCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGCGTGATCATGGTCGTCGGCGTCAACG
GCACCGGCAAGACCACCACCACCGGCAAGCTGGCGCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCCGCC
GACACCTTCCGCGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGCGTCGGCGCCCGTACCGTGCGCGGCCCCGA
GGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTCGTGCTCATCGACA
CCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGCCCG
CTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCGCGCGTCTTCGCCGAGGTCGT
GGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGG
GCGTCCCGGTCAAGCTCGTCGGTCTCGGCGAGGGCGCCGACGACCTGGCCCCGTTCGAGCCCGAGGCGTTCGTGGACGCC
CTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(205-402)

SRP54-type protein, helical bundle domain (SRP54_N)

(118-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.709

100

0.406