Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   F0316_RS13215 Genome accession   NZ_CP043554
Coordinates   2828779..2830614 (-) Length   611 a.a.
NCBI ID   WP_149560564.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2823779..2835614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS13195 (F0316_13195) fhuA 2823855..2825954 (-) 2100 WP_060780470.1 TonB-dependent siderophore receptor FhuA -
  F0316_RS13200 (F0316_13200) - 2826089..2827918 (+) 1830 WP_172626030.1 ABC transporter ATP-binding protein -
  F0316_RS13205 (F0316_13205) - 2827954..2828316 (-) 363 WP_001235441.1 hypothetical protein -
  F0316_RS13210 (F0316_13210) - 2828487..2828786 (-) 300 WP_000807264.1 DUF3630 family protein -
  F0316_RS13215 (F0316_13215) recQ 2828779..2830614 (-) 1836 WP_149560564.1 ATP-dependent DNA helicase RecQ Machinery gene
  F0316_RS13220 (F0316_13220) rarD 2830841..2831683 (+) 843 WP_000264463.1 EamA family transporter RarD -
  F0316_RS13225 (F0316_13225) ggt 2831857..2833611 (+) 1755 WP_172626031.1 gamma-glutamyltransferase -
  F0316_RS13230 (F0316_13230) - 2833768..2834571 (+) 804 WP_172626032.1 AraC family transcriptional regulator -
  F0316_RS13235 (F0316_13235) - 2834646..2835314 (+) 669 WP_148526383.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69110.43 Da        Isoelectric Point: 7.2400

>NTDB_id=338414 F0316_RS13215 WP_149560564.1 2828779..2830614(-) (recQ) [Vibrio cholerae strain RFB16]
MTATLMAESSALFATPERVLHEVFGYQKFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEILAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=338414 F0316_RS13215 WP_149560564.1 2828779..2830614(-) (recQ) [Vibrio cholerae strain RFB16]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GAAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGCTATTTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGTAGCCGTAAAAAAGTGGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGTGCCGC
CAGTTACCATGCCGGGATGGATGCCGATGAACGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGCGATAAGCCTTGT
GGTAACTGCGATATCTGCCTCGACCCACCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCCTTGCTGCGCGG
AGAAATGAATATTGAGCTGGCGGTGCCGCGTTTAGATACCGCGGCGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATATTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.809

97.054

0.396

Multiple sequence alignment