Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F0316_RS08825 Genome accession   NZ_CP043554
Coordinates   1903482..1904084 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain RFB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898482..1909084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS08800 (F0316_08800) sohB 1899082..1900143 (-) 1062 WP_000394900.1 protease SohB -
  F0316_RS08805 (F0316_08805) - 1900302..1901045 (+) 744 WP_149560418.1 YciK family oxidoreductase -
  F0316_RS19985 - 1901148..1901531 (-) 384 WP_232510596.1 hypothetical protein -
  F0316_RS19990 - 1901584..1901892 (-) 309 WP_229767848.1 hypothetical protein -
  F0316_RS08815 (F0316_08815) - 1902545..1902982 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  F0316_RS08820 (F0316_08820) - 1903124..1903372 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  F0316_RS08825 (F0316_08825) recR 1903482..1904084 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  F0316_RS08830 (F0316_08830) - 1904099..1904428 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  F0316_RS08835 (F0316_08835) dnaX 1904499..1906577 (-) 2079 WP_149560419.1 DNA polymerase III subunit gamma/tau -
  F0316_RS08840 (F0316_08840) apt 1906596..1907141 (-) 546 WP_149560420.1 adenine phosphoribosyltransferase -
  F0316_RS08845 (F0316_08845) - 1907273..1907671 (-) 399 WP_001892232.1 YbaN family protein -
  F0316_RS20310 (F0316_08850) - 1907671..1907802 (-) 132 WP_000013199.1 hypothetical protein -
  F0316_RS08855 (F0316_08855) - 1907972..1909063 (-) 1092 WP_172626001.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=338386 F0316_RS08825 WP_001260579.1 1903482..1904084(-) (recR) [Vibrio cholerae strain RFB16]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=338386 F0316_RS08825 WP_001260579.1 1903482..1904084(-) (recR) [Vibrio cholerae strain RFB16]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44