Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CPH39_RS17860 Genome accession   NZ_CP043542
Coordinates   3680025..3680630 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain F2_81     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3675025..3685630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPH39_RS17840 (CPH39_18115) aes 3675166..3676125 (+) 960 WP_053883290.1 acetyl esterase -
  CPH39_RS17845 (CPH39_18120) hemH 3676122..3677084 (-) 963 WP_053883289.1 ferrochelatase -
  CPH39_RS17850 (CPH39_18125) adk 3677216..3677860 (-) 645 WP_001220233.1 adenylate kinase -
  CPH39_RS17855 (CPH39_18130) htpG 3678041..3679915 (-) 1875 WP_053883288.1 molecular chaperone HtpG -
  CPH39_RS17860 (CPH39_18135) recR 3680025..3680630 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CPH39_RS17865 (CPH39_18140) ybaB 3680630..3680959 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CPH39_RS17870 (CPH39_18145) dnaX 3681012..3682943 (-) 1932 WP_096220365.1 DNA polymerase III subunit gamma/tau -
  CPH39_RS17875 (CPH39_18150) apt 3683072..3683623 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CPH39_RS17880 (CPH39_18155) ybaN 3683776..3684153 (-) 378 WP_001188905.1 DUF454 family protein -
  CPH39_RS17885 (CPH39_18160) priC 3684223..3684750 (+) 528 WP_053883286.1 primosomal replication protein N'' -
  CPH39_RS17890 (CPH39_18165) rsmS 3684764..3684925 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=338309 CPH39_RS17860 WP_001195025.1 3680025..3680630(-) (recR) [Escherichia coli strain F2_81]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=338309 CPH39_RS17860 WP_001195025.1 3680025..3680630(-) (recR) [Escherichia coli strain F2_81]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGTTGTCGCATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment