Detailed information NTG0033829

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MDS_RS16820
• Genome accession: NC_015410
• Coordinates: 3647749..3648756 (-)
• Length: 335 a.a.
• NCBI ID: WP_013716393.1
• Uniprot ID: A0ABN4ISH6
• Organism: Ectopseudomonas mendocina NK-01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3642749..3653756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MDS_RS16805 (MDS_3294)	-	3643584..3644084 (-)	501	WP_013716390.1	CinA family protein	-
MDS_RS16810 (MDS_3295)	mutS	3644265..3646832 (+)	2568	WP_013716391.1	DNA mismatch repair protein MutS	-
MDS_RS16815 (MDS_3296)	fdxA	3646971..3647294 (+)	324	WP_013716392.1	ferredoxin FdxA	-
MDS_RS16820 (MDS_3297)	rpoS	3647749..3648756 (-)	1008	WP_013716393.1	RNA polymerase sigma factor RpoS	Regulator
MDS_RS16825 (MDS_3298)	-	3648858..3649739 (-)	882	WP_017363765.1	peptidoglycan DD-metalloendopeptidase family protein	-
MDS_RS16830 (MDS_3299)	-	3649788..3650726 (-)	939	WP_013716395.1	DUF368 domain-containing protein	-
MDS_RS16835 (MDS_3300)	-	3650752..3651426 (-)	675	WP_013716396.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MDS_RS16840 (MDS_3301)	surE	3651426..3652175 (-)	750	WP_013716397.1	5'/3'-nucleotidase SurE	-
MDS_RS16845 (MDS_3302)	truD	3652163..3653221 (-)	1059	WP_013716398.1	tRNA pseudouridine(13) synthase TruD	-
MDS_RS16850 (MDS_3303)	ispF	3653218..3653691 (-)	474	WP_013716399.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38255.60 Da
• Isoelectric Point: 4.9619

>NTDB_id=33829 MDS_RS16820 WP_013716393.1 3647749..3648756(-) (rpoS) [Ectopseudomonas mendocina NK-01]
MALIKKEAPEFDVDDELLLMEPGIVFGEVQGDDLEAPVTRTKAKSATPSKQHKYIDYTRALDATQLYLNEIGFSPLLTPE
EEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSDLTDKQREVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLR
EILEKNGLSSDALFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=33829 MDS_RS16820 WP_013716393.1 3647749..3648756(-) (rpoS) [Ectopseudomonas mendocina NK-01]
ATGGCTCTCATCAAAAAAGAAGCGCCGGAGTTTGACGTCGACGATGAACTGCTCCTCATGGAGCCCGGCATCGTTTTCGG
CGAGGTTCAGGGCGATGACCTGGAAGCACCGGTCACGCGTACCAAGGCCAAGAGCGCCACACCTTCCAAGCAGCACAAGT
ACATCGACTACACCCGGGCGCTAGACGCCACTCAGCTTTACCTCAACGAAATAGGTTTCTCTCCCCTGCTCACTCCCGAA
GAGGAAGTGCACTTCGCGCGCCTGGCGCAGAAGGGCGATCCAGCCGGGCGCAAGCGCATGATCGAGAGCAATCTGCGTCT
GGTCGTGAAAATCGCCAGGCGTTACGTCAATCGTGGTCTCTCTCTGCTCGATCTGATCGAGGAGGGTAACCTGGGCCTGA
TTCGTGCCGTGGAGAAGTTCGATCCGGAGCGGGGGTTCCGGTTTTCGACTTATGCCACCTGGTGGATCCGCCAGACCATC
GAACGGGCGATCATGAACCAGACGCGAACCATCCGTTTGCCGATTCATGTGGTCAAGGAGCTCAACGTCTATCTGCGTGC
GGCTCGTGAGCTGACCCAGAAGCTGGATCATGAGCCTTCCGCGGAAGAAATTGCCAACCTGTTGGAGAAACCGGTGGGTG
AGGTCAAACGTATGCTCGGCCTCAACGAGCGGGTGTCTTCGGTAGATGTCTCGCTCGGTCCGGACTCGGACAAGACGCTA
CTCGACACCCTGACCGATGATCGCCCGACCGATCCCTGCGAGCTGCTGCAGGATGATGATCTGTCGCAGAGCATCGATCA
GTGGTTGTCGGACTTGACCGATAAGCAACGCGAAGTCGTCGTGCGTCGTTTTGGTCTGCGTGGGCATGAGAGCTGTACGC
TGGAAGAGGTAGGCCAGGAGATCGGCCTGACGCGTGAGCGTGTACGCCAGATCCAAGTCGAAGCGCTCAAGCGCCTGCGC
GAAATCCTGGAGAAGAATGGCCTGTCCAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.138	97.612	0.636