Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CPH39_RS05455 Genome accession   NZ_CP043542
Coordinates   1135910..1136425 (+) Length   171 a.a.
NCBI ID   WP_001130213.1    Uniprot ID   -
Organism   Escherichia coli strain F2_81     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130910..1141425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPH39_RS05410 (CPH39_05490) csrA 1131633..1131818 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CPH39_RS05440 (CPH39_05520) yqaB 1133140..1133706 (+) 567 WP_000273302.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CPH39_RS05445 (CPH39_05525) yqaA 1133703..1134131 (+) 429 WP_001287454.1 YqaA family protein -
  CPH39_RS05450 (CPH39_05530) gshA 1134204..1135760 (+) 1557 WP_053884133.1 glutamate--cysteine ligase -
  CPH39_RS05455 (CPH39_05535) luxS 1135910..1136425 (+) 516 WP_001130213.1 S-ribosylhomocysteine lyase Regulator
  CPH39_RS05460 (CPH39_05540) emrB 1136489..1138027 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CPH39_RS05465 (CPH39_05545) emrA 1138044..1139216 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CPH39_RS05470 (CPH39_05550) emrR 1139343..1139873 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CPH39_RS05475 (CPH39_05555) ygaH 1139964..1140299 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  CPH39_RS05480 (CPH39_05560) ygaZ 1140289..1141026 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19402.16 Da        Isoelectric Point: 5.0362

>NTDB_id=338280 CPH39_RS05455 WP_001130213.1 1135910..1136425(+) (luxS) [Escherichia coli strain F2_81]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDVARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=338280 CPH39_RS05455 WP_001130213.1 1135910..1136425(+) (luxS) [Escherichia coli strain F2_81]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACTCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATGTTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment