Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MDS_RS14450 Genome accession   NC_015410
Coordinates   3140209..3140715 (+) Length   168 a.a.
NCBI ID   WP_013715942.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3135209..3145715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS14435 (MDS_2838) qatA 3135543..3137507 (-) 1965 WP_013715940.1 Qat anti-phage system ATPase QatA -
  MDS_RS14440 - 3137800..3138156 (-) 357 WP_041769495.1 hypothetical protein -
  MDS_RS14445 (MDS_2839) - 3138182..3139861 (-) 1680 WP_080558756.1 DUF4041 domain-containing protein -
  MDS_RS14450 (MDS_2840) radC 3140209..3140715 (+) 507 WP_013715942.1 DNA repair protein RadC Machinery gene
  MDS_RS14455 (MDS_2841) - 3140751..3141518 (-) 768 WP_041769496.1 NYN domain-containing protein -
  MDS_RS14460 (MDS_2842) - 3141845..3142228 (-) 384 WP_013715944.1 VOC family protein -
  MDS_RS14465 (MDS_2843) - 3142299..3143411 (-) 1113 WP_013715945.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  MDS_RS14470 (MDS_2844) - 3143480..3144919 (-) 1440 WP_013715946.1 APC family permease -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18624.39 Da        Isoelectric Point: 6.6491

>NTDB_id=33824 MDS_RS14450 WP_013715942.1 3140209..3140715(+) (radC) [Ectopseudomonas mendocina NK-01]
MSQLSLAFDASLMIRDEQGRYLPATAEQILDAARKVIDQKVQRGAAFTSSELVKEYLIAKLGGFEHEVFSALFLDAKHRL
IQYVEMFRGTIDSASVYPREVVKEALRLNAAAVFFAHNHPSGNPEPSQADKVLTQRLKEALALVDVRSLDHIIVAGQRTV
SFAELGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=33824 MDS_RS14450 WP_013715942.1 3140209..3140715(+) (radC) [Ectopseudomonas mendocina NK-01]
ATGTCGCAGCTTTCTCTCGCCTTTGACGCGTCCCTGATGATTCGCGACGAGCAAGGTCGCTATCTGCCTGCCACTGCAGA
ACAGATCCTGGACGCTGCTCGCAAGGTGATCGATCAGAAAGTTCAGCGAGGTGCAGCCTTCACGTCTTCGGAGCTGGTCA
AGGAGTACCTGATCGCGAAGCTGGGTGGCTTTGAGCACGAGGTATTCTCGGCGCTCTTTCTGGATGCCAAGCATCGCCTG
ATCCAATACGTCGAGATGTTCCGCGGCACCATCGACAGCGCGTCAGTGTACCCGCGGGAGGTAGTCAAAGAAGCACTGCG
CCTGAATGCAGCTGCAGTGTTCTTCGCGCACAACCATCCAAGCGGGAATCCAGAGCCAAGCCAGGCTGACAAGGTTCTCA
CACAACGCTTGAAAGAAGCCTTGGCGCTAGTGGATGTCCGTTCGCTGGATCACATCATTGTGGCAGGCCAACGCACCGTA
TCTTTCGCCGAGCTCGGGTTGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

84.524

0.369

Multiple sequence alignment