Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VCM66_RS02750 Genome accession   NC_012578
Coordinates   549154..549672 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae M66-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 544154..554672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCM66_RS02740 (VCM66_0512) - 544564..547419 (+) 2856 WP_001233047.1 pitrilysin family protein -
  VCM66_RS02745 (VCM66_0514) gshA 547531..549105 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  VCM66_RS02750 (VCM66_0515) luxS 549154..549672 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VCM66_RS02755 (VCM66_0516) - 549742..551022 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  VCM66_RS02760 (VCM66_0517) - 551105..551899 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  VCM66_RS02765 (VCM66_0518) ffh 552112..553497 (+) 1386 WP_000462721.1 signal recognition particle protein -
  VCM66_RS02770 (VCM66_0519) rpsP 553733..553981 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  VCM66_RS02775 (VCM66_0520) rimM 554009..554563 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=33819 VCM66_RS02750 WP_001130227.1 549154..549672(+) (luxS) [Vibrio cholerae M66-2]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=33819 VCM66_RS02750 WP_001130227.1 549154..549672(+) (luxS) [Vibrio cholerae M66-2]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment