Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EQH22_RS08555 Genome accession   NZ_CP035258
Coordinates   1713337..1714263 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901927     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708337..1719263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH22_RS08535 (EQH22_08995) treR 1709445..1710155 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH22_RS08540 (EQH22_09000) - 1710188..1710991 (-) 804 WP_000157664.1 ABC transporter ATP-binding protein -
  EQH22_RS08545 (EQH22_09005) - 1711004..1711897 (-) 894 WP_001012093.1 ABC transporter permease -
  EQH22_RS08550 (EQH22_09010) - 1711909..1712718 (-) 810 Protein_1720 ABC transporter substrate-binding protein -
  EQH22_RS08555 (EQH22_09015) amiF 1713337..1714263 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH22_RS08560 (EQH22_09020) amiE 1714274..1715341 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  EQH22_RS08565 (EQH22_09025) amiD 1715350..1716276 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  EQH22_RS08570 (EQH22_09030) amiC 1716276..1717772 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=338164 EQH22_RS08555 WP_001291293.1 1713337..1714263(-) (amiF) [Streptococcus pneumoniae strain TVO_1901927]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=338164 EQH22_RS08555 WP_001291293.1 1713337..1714263(-) (amiF) [Streptococcus pneumoniae strain TVO_1901927]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment