Detailed information NTG0033816

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VCM66_RS02605
• Genome accession: NC_012578
• Coordinates: 522179..523186 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae M66-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 517179..528186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCM66_RS02570 (VCM66_0485)	ftsB	517230..517514 (+)	285	WP_001263189.1	cell division protein FtsB	-
VCM66_RS02575 (VCM66_0486)	ispD	517511..518209 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VCM66_RS02580 (VCM66_0487)	ispF	518206..518682 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VCM66_RS02585 (VCM66_0488)	truD	518712..519797 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
VCM66_RS02590 (VCM66_0489)	surE	519799..520551 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VCM66_RS02595 (VCM66_0490)	-	520544..521170 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VCM66_RS02600 (VCM66_0491)	nlpD	521170..522105 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
VCM66_RS02605 (VCM66_0492)	rpoS	522179..523186 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
VCM66_RS02610 (VCM66_0493)	mutS	523279..525867 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
VCM66_RS02615 (VCM66_0495)	cysM	526135..527022 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=33816 VCM66_RS02605 WP_000116737.1 522179..523186(+) (rpoS) [Vibrio cholerae M66-2]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=33816 VCM66_RS02605 WP_000116737.1 522179..523186(+) (rpoS) [Vibrio cholerae M66-2]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1