Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | MDS_RS10415 | Genome accession | NC_015410 |
| Coordinates | 2281480..2282079 (+) | Length | 199 a.a. |
| NCBI ID | WP_013715190.1 | Uniprot ID | - |
| Organism | Ectopseudomonas mendocina NK-01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2276480..2287079
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDS_RS10395 (MDS_2061) | - | 2277701..2277988 (-) | 288 | WP_013715187.1 | DUF3509 domain-containing protein | - |
| MDS_RS10400 (MDS_2062) | - | 2278043..2278264 (-) | 222 | WP_013715188.1 | hypothetical protein | - |
| MDS_RS10405 (MDS_2063) | dnaX | 2278728..2280860 (+) | 2133 | WP_013715189.1 | DNA polymerase III subunit gamma/tau | - |
| MDS_RS10410 (MDS_2064) | - | 2280941..2281267 (+) | 327 | WP_003460931.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MDS_RS10415 (MDS_2065) | recR | 2281480..2282079 (+) | 600 | WP_013715190.1 | recombination mediator RecR | Machinery gene |
| MDS_RS10420 (MDS_2066) | - | 2282110..2282688 (+) | 579 | WP_013715191.1 | DUF4157 domain-containing protein | - |
| MDS_RS10425 (MDS_2067) | - | 2282755..2283903 (+) | 1149 | WP_013715192.1 | acyl-CoA dehydrogenase family protein | - |
| MDS_RS10430 (MDS_2068) | - | 2283992..2284939 (-) | 948 | WP_013715193.1 | AraC family transcriptional regulator | - |
| MDS_RS26035 | - | 2285269..2285415 (+) | 147 | WP_178095944.1 | hypothetical protein | - |
| MDS_RS10435 (MDS_2069) | - | 2285436..2285735 (+) | 300 | WP_013715194.1 | antibiotic biosynthesis monooxygenase | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 21312.55 Da Isoelectric Point: 5.9327
>NTDB_id=33812 MDS_RS10415 WP_013715190.1 2281480..2282079(+) (recR) [Ectopseudomonas mendocina NK-01]
MSFSPLIRQLIDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEVCQLCLDERRDDS
VLCVVEGPMDVHAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELLERIEAGAFSEVILATNPTVEGEATAHYIAQILA
GKGLVASRIAHGMPLGGELELVDGGTLAHALAGRRPISL
MSFSPLIRQLIDSLRILPGVGQKTAQRMALQLLERDRSGGQRLAQALNAAMEGVGHCKRCRSLSEDEVCQLCLDERRDDS
VLCVVEGPMDVHAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELLERIEAGAFSEVILATNPTVEGEATAHYIAQILA
GKGLVASRIAHGMPLGGELELVDGGTLAHALAGRRPISL
Nucleotide
Download Length: 600 bp
>NTDB_id=33812 MDS_RS10415 WP_013715190.1 2281480..2282079(+) (recR) [Ectopseudomonas mendocina NK-01]
ATGAGCTTCAGCCCCCTGATTCGCCAACTGATCGACTCCTTGCGCATCCTGCCCGGTGTCGGGCAGAAGACTGCGCAGCG
CATGGCCTTGCAGTTGCTCGAGCGTGATCGCAGCGGTGGTCAGCGTTTGGCGCAGGCGCTCAATGCGGCGATGGAGGGCG
TGGGTCACTGCAAGCGCTGCCGCAGCCTCAGCGAAGATGAAGTTTGTCAGCTATGCCTCGACGAGCGTCGTGACGACAGT
GTGCTCTGTGTGGTCGAGGGGCCGATGGACGTGCATGCGGTGGAACAGACCGGCTATCGCGGGCGCTATTTCGTGCTCAA
GGGCCACCTGTCGCCACTCGATGGTCTGGGTCCGGAAGCCATCGGCATTCCCGAACTGCTGGAACGCATCGAGGCTGGCG
CCTTCAGTGAAGTGATCTTGGCCACCAACCCGACAGTAGAGGGCGAGGCCACGGCGCACTACATTGCGCAGATTCTGGCG
GGCAAGGGCCTGGTCGCCTCGCGCATTGCTCACGGCATGCCGCTAGGTGGCGAACTGGAGCTGGTCGACGGCGGTACCCT
GGCTCACGCCCTGGCTGGCCGTCGTCCGATCAGTCTGTAA
ATGAGCTTCAGCCCCCTGATTCGCCAACTGATCGACTCCTTGCGCATCCTGCCCGGTGTCGGGCAGAAGACTGCGCAGCG
CATGGCCTTGCAGTTGCTCGAGCGTGATCGCAGCGGTGGTCAGCGTTTGGCGCAGGCGCTCAATGCGGCGATGGAGGGCG
TGGGTCACTGCAAGCGCTGCCGCAGCCTCAGCGAAGATGAAGTTTGTCAGCTATGCCTCGACGAGCGTCGTGACGACAGT
GTGCTCTGTGTGGTCGAGGGGCCGATGGACGTGCATGCGGTGGAACAGACCGGCTATCGCGGGCGCTATTTCGTGCTCAA
GGGCCACCTGTCGCCACTCGATGGTCTGGGTCCGGAAGCCATCGGCATTCCCGAACTGCTGGAACGCATCGAGGCTGGCG
CCTTCAGTGAAGTGATCTTGGCCACCAACCCGACAGTAGAGGGCGAGGCCACGGCGCACTACATTGCGCAGATTCTGGCG
GGCAAGGGCCTGGTCGCCTCGCGCATTGCTCACGGCATGCCGCTAGGTGGCGAACTGGAGCTGGTCGACGGCGGTACCCT
GGCTCACGCCCTGGCTGGCCGTCGTCCGATCAGTCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Bacillus subtilis subsp. subtilis str. 168 |
48.469 |
98.492 |
0.477 |
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.734 |
100 |
0.467 |