Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   MDS_RS08470 Genome accession   NC_015410
Coordinates   1835807..1836163 (+) Length   118 a.a.
NCBI ID   WP_003245164.1    Uniprot ID   A0A1G6U3I8
Organism   Ectopseudomonas mendocina NK-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830807..1841163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS08445 (MDS_1684) fabF 1830935..1832179 (+) 1245 WP_013714818.1 beta-ketoacyl-ACP synthase II -
  MDS_RS08450 (MDS_1685) pabC 1832179..1832994 (+) 816 WP_013714819.1 aminodeoxychorismate lyase -
  MDS_RS08455 (MDS_1686) mltG 1832998..1834053 (+) 1056 WP_013714820.1 endolytic transglycosylase MltG -
  MDS_RS08460 (MDS_1687) tmk 1834063..1834695 (+) 633 WP_013714821.1 dTMP kinase -
  MDS_RS08465 (MDS_1688) - 1834688..1835680 (+) 993 WP_013714822.1 DNA polymerase III subunit delta' -
  MDS_RS08470 (MDS_1689) pilZ 1835807..1836163 (+) 357 WP_003245164.1 PilZ domain-containing protein Machinery gene
  MDS_RS08475 (MDS_1690) - 1836278..1837066 (+) 789 WP_013714823.1 TatD family hydrolase -
  MDS_RS08480 (MDS_1691) - 1837415..1838548 (-) 1134 WP_013714824.1 aminotransferase class V-fold PLP-dependent enzyme -
  MDS_RS08485 (MDS_1692) - 1838624..1839244 (+) 621 WP_003245158.1 TetR/AcrR family transcriptional regulator -
  MDS_RS08490 (MDS_1693) - 1839377..1840345 (+) 969 WP_013714825.1 GTP 3',8-cyclase MoaA -
  MDS_RS08495 (MDS_1694) - 1840384..1841133 (-) 750 WP_013714826.1 membrane protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12820.89 Da        Isoelectric Point: 9.9700

>NTDB_id=33806 MDS_RS08470 WP_003245164.1 1835807..1836163(+) (pilZ) [Ectopseudomonas mendocina NK-01]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLNLMDEPEKIPVAGKVVWITPKGAQG
NRAAGVGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=33806 MDS_RS08470 WP_003245164.1 1835807..1836163(+) (pilZ) [Ectopseudomonas mendocina NK-01]
ATGAGTCTGCCACCCAATCTGGGGCCCCGTAACGGAATTCTGTCCCTGACCATCAAGGACAAGTCCGTGCTGTACGCGGC
CTACATGCCTTTCATCAAGAACGGCGGACTCTTCATTCCCACCAACAAGAGCTACAAGCTCGGCGACGAAGTGTTCATGC
TGCTGAACCTGATGGACGAGCCGGAGAAGATTCCGGTCGCTGGCAAGGTGGTGTGGATTACGCCGAAAGGTGCTCAGGGC
AATCGCGCTGCCGGCGTCGGCGTGCAATTCAACGACGGTGACAACACCGCGCGTAACAAGATCGAAACCTACCTCGCTGG
CGCGCTGAAGTCCGATCGCCCGACTCACACCATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6U3I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

50.926

91.525

0.466
  pilZ Legionella pneumophila strain ERS1305867

50.926

91.525

0.466