Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MDS_RS08355 Genome accession   NC_015410
Coordinates   1815173..1815805 (+) Length   210 a.a.
NCBI ID   WP_013714801.1    Uniprot ID   A0A1H0K8K5
Organism   Ectopseudomonas mendocina NK-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810173..1820805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS08335 (MDS_1662) lolD 1810258..1810959 (+) 702 WP_013714797.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MDS_RS08340 (MDS_1663) - 1810959..1812203 (+) 1245 WP_013714798.1 lipoprotein-releasing ABC transporter permease subunit -
  MDS_RS08345 (MDS_1664) - 1812237..1812764 (-) 528 WP_013714799.1 DUF2062 domain-containing protein -
  MDS_RS08350 (MDS_1665) comA 1812903..1815116 (+) 2214 WP_013714800.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MDS_RS08355 (MDS_1666) exbB 1815173..1815805 (+) 633 WP_013714801.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MDS_RS08360 (MDS_1667) - 1815802..1816230 (+) 429 WP_013714802.1 biopolymer transporter ExbD -
  MDS_RS08365 (MDS_1668) lpxK 1816231..1817232 (+) 1002 WP_013714803.1 tetraacyldisaccharide 4'-kinase -
  MDS_RS08370 (MDS_1669) - 1817255..1817440 (+) 186 WP_013714804.1 Trm112 family protein -
  MDS_RS08375 (MDS_1670) kdsB 1817441..1818205 (+) 765 WP_013714805.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MDS_RS08380 (MDS_1671) - 1818205..1818669 (+) 465 WP_013714806.1 low molecular weight protein-tyrosine-phosphatase -
  MDS_RS08385 (MDS_1672) murB 1818666..1819685 (+) 1020 WP_013714807.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22855.10 Da        Isoelectric Point: 7.8833

>NTDB_id=33805 MDS_RS08355 WP_013714801.1 1815173..1815805(+) (exbB) [Ectopseudomonas mendocina NK-01]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=33805 MDS_RS08355 WP_013714801.1 1815173..1815805(+) (exbB) [Ectopseudomonas mendocina NK-01]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACTCTGCGGCCCGCCCGCGTCACCCCAGCCAATCTGCTGGCTCAGGTATGGCGCTGGATCAAGGACA
AGAAACTCAATAACCAGAAACTCAAGGAACTGCGCGAGGATTCGCCGCTGGGGCAGATTCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCATGATCTGGAGCGTTACCT
CAATGCCCTGGGCACCATCGCCGGCATCGCTCCGCTGCTTGGCCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GTTCCTTCATGGGTTCGGGCATGGCCAATGCGCCGATGCTCGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCAGCC
GGCCTGATGGTGGCGATCCCGGCGCTGTTCTTCCATCGTTACCTGCAGCGCCGCGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0K8K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9

Multiple sequence alignment