Detailed information NTG0338034

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: FTN78_RS07180
• Genome accession: NZ_CP043523
• Coordinates: 1407740..1409518 (+)
• Length: 592 a.a.
• NCBI ID: WP_010906147.1
• Uniprot ID: Q9CEM9
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1402740..1414518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FTN78_RS07160 (FTN78_chr1420)	-	1402828..1404501 (-)	1674	WP_010906146.1	polysaccharide biosynthesis protein	-
FTN78_RS07165 (FTN78_chr1421)	-	1404711..1406162 (+)	1452	WP_003130330.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	-
FTN78_RS07170 (FTN78_chr1422)	-	1406241..1406501 (-)	261	WP_017864931.1	hypothetical protein	-
FTN78_RS07175 (FTN78_chr1423)	adhP	1406522..1407544 (-)	1023	WP_150891073.1	alcohol dehydrogenase AdhP	-
FTN78_RS07180 (FTN78_chr1424)	recQ	1407740..1409518 (+)	1779	WP_010906147.1	DNA helicase RecQ	Machinery gene
FTN78_RS07185 (FTN78_chr1425)	yjeM	1409554..1411080 (-)	1527	WP_003130322.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
FTN78_RS07190 (FTN78_chr1426)	pepT	1411360..1412601 (-)	1242	WP_003130321.1	peptidase T	-
FTN78_RS07195 (FTN78_chr1427)	-	1412630..1413427 (-)	798	WP_010906148.1	DUF1803 domain-containing protein	-
FTN78_RS07200 (FTN78_chr1428)	-	1413427..1414371 (-)	945	WP_003130319.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 592 a.a.
• Molecular weight: 66958.82 Da
• Isoelectric Point: 6.4494

>NTDB_id=338034 FTN78_RS07180 WP_010906147.1 1407740..1409518(+) (recQ) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDANLLFSPNDLRIRNFLIEQSEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
QSQFLQISGVGPVKLKKYGRLFIDKISEYKKS

Nucleotide

• Length: 1779 bp

>NTDB_id=338034 FTN78_RS07180 WP_010906147.1 1407740..1409518(+) (recQ) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCAAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAATCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTAACCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAAG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TACAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAATGTAGTAATTGTCTTGATGAAAGAGAG
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCCAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCCTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CAAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCAAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

• DEAD/DEAH box helicase (DEAD) (19-179)

• Helicase conserved C-terminal domain (Helicase_C) (214-322)

• RecQ zinc-binding (RecQ_Zn_bind) (335-396)

• HRDC domain (HRDC) (520-584)

• RQC domain (RQC) (399-503)

3D structure

• AlphaFold DB: Q9CEM9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	51.107	99.155	0.507