Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FQT78_RS19080 Genome accession   NZ_CP043487
Coordinates   3957981..3958571 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain AQ15     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952981..3963571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT78_RS19065 (FQT78_19395) uhpT 3953621..3955012 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  FQT78_RS19070 (FQT78_19400) uhpC 3955150..3956469 (-) 1320 WP_000936565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  FQT78_RS19075 (FQT78_19405) uhpB 3956479..3957981 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  FQT78_RS19080 (FQT78_19410) letA 3957981..3958571 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  FQT78_RS19085 (FQT78_19415) ilvN 3958646..3958936 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  FQT78_RS19090 (FQT78_19420) ilvB 3958940..3960628 (-) 1689 WP_000168480.1 acetolactate synthase large subunit -
  FQT78_RS19095 (FQT78_19425) ivbL 3960734..3960832 (-) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  FQT78_RS19100 (FQT78_19430) tisB 3961397..3961486 (+) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  FQT78_RS23210 ysdE 3961749..3961823 (-) 75 WP_211180519.1 protein YsdE -
  FQT78_RS19105 (FQT78_19435) emrD 3961905..3963089 (+) 1185 WP_001349998.1 multidrug efflux MFS transporter EmrD -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=337979 FQT78_RS19080 WP_000633668.1 3957981..3958571(-) (letA) [Escherichia coli strain AQ15]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=337979 FQT78_RS19080 WP_000633668.1 3957981..3958571(-) (letA) [Escherichia coli strain AQ15]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCTCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCTACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTGACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment