Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | MDS_RS05250 | Genome accession | NC_015410 |
| Coordinates | 1154889..1155404 (-) | Length | 171 a.a. |
| NCBI ID | WP_013714188.1 | Uniprot ID | - |
| Organism | Ectopseudomonas mendocina NK-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1149889..1160404
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDS_RS05240 (MDS_1047) | - | 1153616..1154170 (-) | 555 | WP_013714186.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| MDS_RS05245 (MDS_1048) | - | 1154167..1154889 (-) | 723 | WP_013714187.1 | PilW family protein | - |
| MDS_RS05250 (MDS_1049) | pilV | 1154889..1155404 (-) | 516 | WP_013714188.1 | type IV pilus modification protein PilV | Machinery gene |
| MDS_RS05255 (MDS_1050) | - | 1155401..1155889 (-) | 489 | WP_013714189.1 | GspH/FimT family pseudopilin | - |
| MDS_RS05260 (MDS_1051) | - | 1156005..1156508 (-) | 504 | WP_041769348.1 | GspH/FimT family pseudopilin | - |
| MDS_RS05265 (MDS_1052) | thiO | 1156599..1157696 (+) | 1098 | WP_041769349.1 | glycine oxidase ThiO | - |
| MDS_RS05270 (MDS_1053) | - | 1157713..1159053 (-) | 1341 | WP_013714192.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 17828.43 Da Isoelectric Point: 4.5497
>NTDB_id=33796 MDS_RS05250 WP_013714188.1 1154889..1155404(-) (pilV) [Ectopseudomonas mendocina NK-01]
MTPSISRGFSLIEVLVTLVLLTIGMLGLVAMQGRGIQFTADSVSRNNAAMLATEIMEKIRANSNGRDDYLIAQLEAEGSC
GAGPVAANDVAEQLTCWSEKVRILMPGTAGGDADAVAVRNAFYICRSVVPGTCAAGAGSTVEVQVAWRSNGETCGSGADP
FICTLRLRGEL
MTPSISRGFSLIEVLVTLVLLTIGMLGLVAMQGRGIQFTADSVSRNNAAMLATEIMEKIRANSNGRDDYLIAQLEAEGSC
GAGPVAANDVAEQLTCWSEKVRILMPGTAGGDADAVAVRNAFYICRSVVPGTCAAGAGSTVEVQVAWRSNGETCGSGADP
FICTLRLRGEL
Nucleotide
Download Length: 516 bp
>NTDB_id=33796 MDS_RS05250 WP_013714188.1 1154889..1155404(-) (pilV) [Ectopseudomonas mendocina NK-01]
ATGACACCCTCTATCTCACGCGGCTTCAGCCTCATCGAGGTGCTGGTCACGCTGGTACTGCTGACGATCGGGATGCTCGG
TCTGGTGGCTATGCAGGGACGGGGGATTCAGTTCACTGCCGACTCAGTGTCACGTAACAACGCCGCCATGCTTGCAACCG
AGATAATGGAAAAGATCCGAGCCAATTCTAATGGCCGTGACGATTACCTGATTGCCCAGCTTGAAGCCGAAGGCAGTTGT
GGGGCAGGTCCGGTTGCAGCCAACGATGTAGCTGAGCAATTAACCTGCTGGAGCGAAAAGGTTCGGATCTTGATGCCAGG
TACTGCCGGTGGTGATGCCGATGCGGTAGCCGTACGCAATGCCTTCTACATATGCCGCTCAGTCGTACCCGGTACCTGCG
CCGCAGGTGCTGGATCGACCGTCGAAGTCCAGGTCGCCTGGCGCTCCAATGGCGAAACCTGCGGAAGCGGTGCCGATCCC
TTCATCTGTACCTTGCGCCTGCGAGGAGAACTCTGA
ATGACACCCTCTATCTCACGCGGCTTCAGCCTCATCGAGGTGCTGGTCACGCTGGTACTGCTGACGATCGGGATGCTCGG
TCTGGTGGCTATGCAGGGACGGGGGATTCAGTTCACTGCCGACTCAGTGTCACGTAACAACGCCGCCATGCTTGCAACCG
AGATAATGGAAAAGATCCGAGCCAATTCTAATGGCCGTGACGATTACCTGATTGCCCAGCTTGAAGCCGAAGGCAGTTGT
GGGGCAGGTCCGGTTGCAGCCAACGATGTAGCTGAGCAATTAACCTGCTGGAGCGAAAAGGTTCGGATCTTGATGCCAGG
TACTGCCGGTGGTGATGCCGATGCGGTAGCCGTACGCAATGCCTTCTACATATGCCGCTCAGTCGTACCCGGTACCTGCG
CCGCAGGTGCTGGATCGACCGTCGAAGTCCAGGTCGCCTGGCGCTCCAATGGCGAAACCTGCGGAAGCGGTGCCGATCCC
TTCATCTGTACCTTGCGCCTGCGAGGAGAACTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Pseudomonas aeruginosa PAK |
40.884 |
100 |
0.433 |