Detailed information NTG0337959

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FQT78_RS14125
• Genome accession: NZ_CP043487
• Coordinates: 2924591..2925583 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AQ15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2919591..2930583

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQT78_RS14100 (FQT78_14315)	ygbN	2920246..2921610 (+)	1365	WP_000104439.1	GntP family transporter	-
FQT78_RS14105 (FQT78_14320)	-	2921649..2921885 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FQT78_RS14110 (FQT78_14325)	-	2921896..2923323 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FQT78_RS14115 (FQT78_14330)	-	2923323..2923916 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FQT78_RS14120 (FQT78_14335)	-	2924063..2924470 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
FQT78_RS14125 (FQT78_14340)	rpoS	2924591..2925583 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FQT78_RS14130 (FQT78_14345)	nlpD	2925646..2926740 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FQT78_RS14135 (FQT78_14350)	pcm	2926925..2927551 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FQT78_RS14140 (FQT78_14355)	surE	2927545..2928306 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
FQT78_RS14145 (FQT78_14360)	truD	2928287..2929336 (-)	1050	WP_000568949.1	tRNA pseudouridine(13) synthase TruD	-
FQT78_RS14150 (FQT78_14365)	ispF	2929333..2929812 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FQT78_RS14155 (FQT78_14370)	ispD	2929812..2930522 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=337959 FQT78_RS14125 WP_000081550.1 2924591..2925583(-) (rpoS) [Escherichia coli strain AQ15]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=337959 FQT78_RS14125 WP_000081550.1 2924591..2925583(-) (rpoS) [Escherichia coli strain AQ15]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715