Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EQH26_RS08810 Genome accession   NZ_CP035254
Coordinates   1750544..1751470 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1745544..1756470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS08790 (EQH26_09295) treR 1746660..1747370 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH26_RS08795 (EQH26_09300) - 1747403..1748197 (-) 795 WP_054369635.1 ABC transporter ATP-binding protein -
  EQH26_RS08800 (EQH26_09305) - 1748210..1749104 (-) 895 Protein_1765 ABC transporter permease -
  EQH26_RS08805 (EQH26_09310) - 1749116..1749925 (-) 810 WP_001821834.1 ABC transporter substrate-binding protein -
  EQH26_RS10870 - 1750347..1750478 (-) 132 WP_000787593.1 hypothetical protein -
  EQH26_RS08810 (EQH26_09315) amiF 1750544..1751470 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH26_RS08815 (EQH26_09320) amiE 1751481..1752548 (-) 1068 WP_000159559.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS08820 (EQH26_09325) amiD 1752557..1753483 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  EQH26_RS08825 (EQH26_09330) amiC 1753483..1754979 (-) 1497 WP_000759903.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=337925 EQH26_RS08810 WP_001291293.1 1750544..1751470(-) (amiF) [Streptococcus pneumoniae strain TVO_1901932]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=337925 EQH26_RS08810 WP_001291293.1 1750544..1751470(-) (amiF) [Streptococcus pneumoniae strain TVO_1901932]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment