Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FQT94_RS13770 Genome accession   NZ_CP043486
Coordinates   2854823..2855338 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SL112     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849823..2860338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT94_RS13750 (FQT94_13955) emrA 2849973..2851145 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FQT94_RS13755 (FQT94_13960) emrB 2851162..2852700 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FQT94_RS13760 (FQT94_13965) - 2852958..2853665 (+) 708 WP_001097116.1 RNA ligase family protein -
  FQT94_RS13765 (FQT94_13970) - 2853662..2854774 (+) 1113 WP_000638146.1 ATP-binding protein -
  FQT94_RS13770 (FQT94_13975) luxS 2854823..2855338 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FQT94_RS13775 (FQT94_13980) gshA 2855488..2857044 (-) 1557 WP_153986245.1 glutamate--cysteine ligase -
  FQT94_RS13780 (FQT94_13985) yqaA 2857117..2857545 (-) 429 WP_001287457.1 YqaA family protein -
  FQT94_RS13785 (FQT94_13990) yqaB 2857542..2858108 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FQT94_RS13815 (FQT94_14020) csrA 2859566..2859751 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=337878 FQT94_RS13770 WP_001130211.1 2854823..2855338(-) (luxS) [Escherichia coli strain SL112]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=337878 FQT94_RS13770 WP_001130211.1 2854823..2855338(-) (luxS) [Escherichia coli strain SL112]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment