Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQH28_RS08845 Genome accession   NZ_CP035252
Coordinates   1759140..1759850 (+) Length   236 a.a.
NCBI ID   WP_041172765.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754140..1764850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS08830 (EQH28_09360) - 1754681..1754929 (-) 249 WP_000364990.1 YneF family protein -
  EQH28_RS08835 (EQH28_09365) treC 1755185..1756810 (-) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  EQH28_RS08840 (EQH28_09375) treP 1756988..1758955 (-) 1968 WP_000514317.1 PTS system trehalose-specific EIIBC component -
  EQH28_RS08845 (EQH28_09380) treR 1759140..1759850 (+) 711 WP_041172765.1 trehalose operon repressor Regulator
  EQH28_RS08850 (EQH28_09385) - 1759883..1760686 (-) 804 WP_000202629.1 ABC transporter ATP-binding protein -
  EQH28_RS08855 (EQH28_09390) - 1760699..1761592 (-) 894 WP_001012092.1 ABC transporter permease -
  EQH28_RS08860 (EQH28_09395) - 1761604..1762413 (-) 810 WP_001813348.1 ABC transporter substrate-binding protein -
  EQH28_RS08865 (EQH28_09400) amiF 1763031..1763957 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27678.86 Da        Isoelectric Point: 8.9698

>NTDB_id=337842 EQH28_RS08845 WP_041172765.1 1759140..1759850(+) (treR) [Streptococcus pneumoniae strain TVO_1901934]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIREQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSNRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=337842 EQH28_RS08845 WP_041172765.1 1759140..1759850(+) (treR) [Streptococcus pneumoniae strain TVO_1901934]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGAGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCAACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589

Multiple sequence alignment