Detailed information NTG0337813

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FZ043_RS19090
• Genome accession: NZ_CP043478
• Coordinates: 3826248..3827240 (-)
• Length: 330 a.a.
• NCBI ID: WP_149509022.1
• Uniprot ID: -
• Organism: Escherichia coli strain ST130
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3821248..3832240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FZ043_RS19065 (FZ043_19065)	ygbN	3821903..3823267 (+)	1365	WP_000104439.1	GntP family transporter	-
FZ043_RS19070 (FZ043_19070)	-	3823306..3823542 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FZ043_RS19075 (FZ043_19075)	-	3823553..3824980 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FZ043_RS19080 (FZ043_19080)	-	3824980..3825573 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FZ043_RS19085 (FZ043_19085)	-	3825720..3826127 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
FZ043_RS19090 (FZ043_19090)	rpoS	3826248..3827240 (-)	993	WP_149509022.1	RNA polymerase sigma factor RpoS	Regulator
FZ043_RS19095 (FZ043_19095)	nlpD	3827303..3828397 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FZ043_RS19100 (FZ043_19100)	pcm	3828582..3829208 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FZ043_RS19105 (FZ043_19105)	surE	3829202..3829963 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FZ043_RS19110 (FZ043_19110)	truD	3829944..3830993 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FZ043_RS19115 (FZ043_19115)	ispF	3830990..3831469 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FZ043_RS19120 (FZ043_19120)	ispD	3831469..3832179 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37957.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=337813 FZ043_RS19090 WP_149509022.1 3826248..3827240(-) (rpoS) [Escherichia coli strain ST130]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATLRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=337813 FZ043_RS19090 WP_149509022.1 3826248..3827240(-) (rpoS) [Escherichia coli strain ST130]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACTGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715