Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FZ043_RS15135 Genome accession   NZ_CP043478
Coordinates   3015859..3017286 (+) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain ST130     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3010859..3022286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ043_RS15095 (FZ043_15095) yeeW 3011043..3011237 (+) 195 WP_000988599.1 DUF5983 family protein -
  FZ043_RS15100 (FZ043_15100) - 3011283..3011363 (+) 81 Protein_2918 hypothetical protein -
  FZ043_RS26130 (FZ043_15105) - 3011652..3011825 (-) 174 WP_032082634.1 transposase domain-containing protein -
  FZ043_RS26135 (FZ043_15110) - 3011852..3012034 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FZ043_RS15115 (FZ043_15115) tmaR 3012135..3012464 (-) 330 WP_000450409.1 DUF496 family protein -
  FZ043_RS15120 (FZ043_15120) yeeA 3012636..3013694 (-) 1059 WP_001200905.1 FUSC family protein -
  FZ043_RS15125 (FZ043_15125) sbmC 3013892..3014365 (-) 474 WP_029402285.1 DNA gyrase inhibitor SbmC -
  FZ043_RS15130 (FZ043_15130) dacD 3014484..3015650 (-) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FZ043_RS15135 (FZ043_15135) sbcB 3015859..3017286 (+) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  FZ043_RS15140 (FZ043_15140) tsuB 3017329..3017556 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FZ043_RS15145 (FZ043_15145) tsuA 3017570..3018628 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  FZ043_RS15150 (FZ043_15150) plaP 3018807..3020165 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FZ043_RS15155 (FZ043_15155) yoeI 3020155..3020217 (-) 63 WP_010723108.1 membrane protein YoeI -
  FZ043_RS15160 (FZ043_15160) yeeY 3020432..3021361 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FZ043_RS15165 (FZ043_15165) yeeZ 3021407..3022231 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=337801 FZ043_RS15135 WP_000980592.1 3015859..3017286(+) (sbcB) [Escherichia coli strain ST130]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=337801 FZ043_RS15135 WP_000980592.1 3015859..3017286(+) (sbcB) [Escherichia coli strain ST130]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment