Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   EQH29_RS08610 Genome accession   NZ_CP035251
Coordinates   1735743..1736810 (-) Length   355 a.a.
NCBI ID   WP_000159557.1    Uniprot ID   A0AAX3HEK0
Organism   Streptococcus pneumoniae strain TVO_1901935     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1730743..1741810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH29_RS08585 (EQH29_09125) treR 1730915..1731625 (+) 711 WP_041172765.1 trehalose operon repressor Regulator
  EQH29_RS08590 (EQH29_09130) - 1731658..1732461 (-) 804 WP_000202629.1 ABC transporter ATP-binding protein -
  EQH29_RS08595 (EQH29_09135) - 1732474..1733367 (-) 894 WP_001012092.1 ABC transporter permease -
  EQH29_RS08600 (EQH29_09140) - 1733379..1734188 (-) 810 WP_001813348.1 ABC transporter substrate-binding protein -
  EQH29_RS08605 (EQH29_09145) amiF 1734806..1735732 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  EQH29_RS08610 (EQH29_09150) amiE 1735743..1736810 (-) 1068 WP_000159557.1 ABC transporter ATP-binding protein Regulator
  EQH29_RS08615 (EQH29_09155) amiD 1736819..1737745 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  EQH29_RS08620 (EQH29_09160) amiC 1737745..1739241 (-) 1497 WP_000759903.1 ABC transporter permease Regulator
  EQH29_RS08625 (EQH29_09165) amiA3 1739308..1741287 (-) 1980 WP_000742232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39503.17 Da        Isoelectric Point: 5.0425

>NTDB_id=337765 EQH29_RS08610 WP_000159557.1 1735743..1736810(-) (amiE) [Streptococcus pneumoniae strain TVO_1901935]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSKTHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=337765 EQH29_RS08610 WP_000159557.1 1735743..1736810(-) (amiE) [Streptococcus pneumoniae strain TVO_1901935]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGAACTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCTT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAAAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.451

100

0.885

  amiE Streptococcus thermophilus LMG 18311

86.479

100

0.865

  amiE Streptococcus thermophilus LMD-9

86.479

100

0.865

  oppD Streptococcus mutans UA159

54.545

99.155

0.541


Multiple sequence alignment