Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FZ924_RS17305 Genome accession   NZ_CP043469
Coordinates   3600274..3600600 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain 18WIARLN0021     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3595274..3605600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ924_RS17285 (FZ924_17455) - 3595374..3596003 (-) 630 WP_000219967.1 FHA domain-containing protein -
  FZ924_RS17290 (FZ924_17460) gspD 3596044..3598320 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  FZ924_RS17295 (FZ924_17465) - 3598362..3599198 (-) 837 WP_000870033.1 type II secretion system protein N -
  FZ924_RS17300 (FZ924_17470) gspN 3599198..3599941 (-) 744 WP_000730343.1 type II secretion system protein N -
  FZ924_RS17305 (FZ924_17475) hns 3600274..3600600 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  FZ924_RS17310 (FZ924_17480) - 3600831..3601490 (+) 660 WP_000782406.1 IS1595-like element ISAba36 family transposase -
  FZ924_RS17315 (FZ924_17485) - 3601515..3601955 (-) 441 WP_000661570.1 thioesterase family protein -
  FZ924_RS17320 (FZ924_17490) - 3601963..3603156 (-) 1194 WP_000681783.1 hypothetical protein -
  FZ924_RS17325 (FZ924_17495) - 3603166..3604005 (-) 840 WP_001230204.1 hypothetical protein -
  FZ924_RS17330 (FZ924_17500) - 3604014..3604781 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=337756 FZ924_RS17305 WP_000801427.1 3600274..3600600(-) (hns) [Acinetobacter baumannii strain 18WIARLN0021]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=337756 FZ924_RS17305 WP_000801427.1 3600274..3600600(-) (hns) [Acinetobacter baumannii strain 18WIARLN0021]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment