Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LHK_RS09245 Genome accession   NC_012559
Coordinates   1925470..1926831 (-) Length   453 a.a.
NCBI ID   WP_012697509.1    Uniprot ID   -
Organism   Laribacter hongkongensis HLHK9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920470..1931831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS09225 (LHK_02034) - 1922008..1922403 (-) 396 WP_012697504.1 RNA-binding S4 domain-containing protein -
  LHK_RS09230 (LHK_02036) - 1922400..1923056 (-) 657 WP_012697506.1 fumarylacetoacetate hydrolase family protein -
  LHK_RS17945 - 1923897..1924610 (+) 714 Protein_1907 methyl-accepting chemotaxis protein -
  LHK_RS09240 (LHK_02038) - 1924663..1925343 (-) 681 WP_012697508.1 energy-coupling factor ABC transporter permease -
  LHK_RS09245 (LHK_02039) radA 1925470..1926831 (-) 1362 WP_012697509.1 DNA repair protein RadA Machinery gene
  LHK_RS09250 (LHK_02040) - 1926831..1927292 (-) 462 WP_012697510.1 hypothetical protein -
  LHK_RS09255 (LHK_02041) - 1927319..1928062 (-) 744 WP_012697511.1 SDR family oxidoreductase -
  LHK_RS09260 (LHK_02042) hpnE 1928059..1929378 (-) 1320 WP_012697512.1 hydroxysqualene dehydroxylase HpnE -
  LHK_RS09265 (LHK_02043) hpnD 1929339..1930190 (-) 852 WP_012697513.1 presqualene diphosphate synthase HpnD -
  LHK_RS09270 (LHK_02044) hpnC 1930232..1931044 (-) 813 WP_027823325.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47873.11 Da        Isoelectric Point: 6.8879

>NTDB_id=33754 LHK_RS09245 WP_012697509.1 1925470..1926831(-) (radA) [Laribacter hongkongensis HLHK9]
MGKSKTVYVCSDCGTQSPKWQGQCPGCGAWNTLVETVVEPARAGGRFESLSVTSTVQTLADVEAVEAPRAPTGIDELDRV
LGGGLVRGAVVLIGGDPGIGKSTLLLQALATIGSSRKVLYVTGEESAAQVALRASRLAVDARSVRLLAEIRLDQILATLR
HEAPEVAVIDSIQTMYTDALQSAPGSVAQVRECAAQLTRVAKQTGITIVMVGHVTKEGALAGPRVLEHIVDSVLYFEGDT
HSSFRMIRAIKNRFGAVNELGVFAMTDRGLRGVSNPSAIFLSSHRDDVPGSCVLVTQEGTRPLLVEIQALVDEAHAPQPR
RLSVGLEQNRLAMLLAVLHRHAGVACFDQDVFVNAVGGVKISEPAADLAVLLAIASSLRNRPLPAKMVVFGEVGLAGEVR
PVQRGQERLKEAAKLGFTRAIVPAANQPKGGIEGMEIVAVERLDEAVAACRDA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=33754 LHK_RS09245 WP_012697509.1 1925470..1926831(-) (radA) [Laribacter hongkongensis HLHK9]
ATGGGCAAGAGCAAGACGGTCTACGTCTGTAGTGACTGCGGTACGCAGTCACCCAAATGGCAGGGACAGTGCCCGGGTTG
CGGTGCCTGGAACACGCTGGTTGAAACCGTGGTCGAGCCGGCCAGGGCCGGCGGGCGCTTCGAGTCGCTGTCGGTGACCT
CCACCGTGCAGACGCTGGCTGATGTCGAGGCCGTGGAAGCGCCACGCGCGCCCACGGGCATCGACGAACTGGACCGGGTG
CTGGGGGGCGGGCTGGTACGTGGTGCCGTGGTGCTGATCGGTGGGGATCCCGGCATCGGCAAGTCGACCTTGCTGTTGCA
GGCGCTGGCGACCATCGGCTCCAGCCGCAAGGTGCTGTATGTCACTGGCGAAGAGTCGGCCGCCCAGGTGGCGTTGCGTG
CATCCCGGCTGGCGGTGGACGCACGTTCGGTGCGCCTTTTGGCGGAAATCCGGCTGGACCAGATTCTGGCGACGCTGCGG
CACGAAGCGCCGGAAGTGGCGGTGATCGACTCGATCCAGACCATGTATACCGATGCCTTGCAGTCAGCACCGGGTTCGGT
AGCGCAGGTCCGCGAATGTGCGGCCCAGCTGACCCGCGTGGCCAAGCAGACCGGCATCACCATCGTCATGGTGGGACACG
TGACCAAGGAAGGGGCTTTGGCCGGGCCGCGGGTGCTGGAGCACATTGTCGATTCGGTGCTGTATTTCGAGGGCGATACG
CATTCGAGCTTCCGCATGATCCGTGCGATCAAGAACCGCTTTGGTGCCGTCAACGAACTGGGCGTGTTTGCCATGACCGA
CCGCGGCCTGCGCGGGGTGTCCAATCCGTCGGCGATCTTTTTGTCCAGCCATCGTGATGACGTGCCGGGGTCATGCGTAC
TGGTGACGCAGGAAGGCACGCGTCCCCTGCTGGTGGAGATACAGGCGCTGGTGGACGAGGCGCATGCGCCGCAGCCCAGG
CGGCTGTCGGTCGGGCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGGCATGCTGGTGTGGCCTGCTT
TGACCAGGATGTATTCGTCAATGCCGTCGGCGGTGTGAAGATTTCCGAACCGGCCGCTGACCTAGCGGTATTGCTGGCCA
TTGCCTCGTCACTGCGCAACCGGCCGCTGCCGGCCAAAATGGTGGTGTTTGGCGAAGTCGGGCTGGCGGGTGAGGTGCGT
CCGGTGCAGCGCGGGCAGGAGCGGCTGAAGGAAGCGGCCAAGCTGGGATTTACCCGCGCAATCGTGCCGGCGGCCAACCA
GCCCAAGGGTGGTATTGAAGGAATGGAAATCGTGGCGGTCGAGCGGCTGGACGAAGCAGTGGCGGCCTGCCGGGATGCCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(342-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis SK321

47.368

96.468

0.457
  radA Streptococcus pneumoniae D39

47.754

93.377

0.446
  radA Streptococcus pneumoniae TIGR4

47.754

93.377

0.446
  radA Streptococcus pneumoniae R6

47.754

93.377

0.446
  radA Streptococcus pneumoniae Rx1

47.754

93.377

0.446
  radA Streptococcus mitis NCTC 12261

47.518

93.377

0.444

Multiple sequence alignment