Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LHK_RS09180 Genome accession   NC_012559
Coordinates   1914724..1916154 (+) Length   476 a.a.
NCBI ID   WP_012697495.1    Uniprot ID   C1D969
Organism   Laribacter hongkongensis HLHK9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1909724..1921154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK_RS09155 (LHK_02019) - 1911349..1912333 (+) 985 Protein_1891 SIS domain-containing protein -
  LHK_RS09160 (LHK_02021) - 1912341..1912868 (+) 528 WP_012697491.1 HAD family hydrolase -
  LHK_RS09165 (LHK_02022) lptC 1912875..1913447 (+) 573 WP_012697492.1 LPS export ABC transporter periplasmic protein LptC -
  LHK_RS09170 (LHK_02023) lptA 1913434..1913985 (+) 552 WP_012697493.1 lipopolysaccharide transport periplasmic protein LptA -
  LHK_RS09175 (LHK_02024) lptB 1913982..1914716 (+) 735 WP_012697494.1 LPS export ABC transporter ATP-binding protein -
  LHK_RS09180 (LHK_02025) rpoN/rpoN1 1914724..1916154 (+) 1431 WP_012697495.1 RNA polymerase factor sigma-54 Machinery gene
  LHK_RS09185 (LHK_02026) hpf 1916234..1916572 (+) 339 WP_012697496.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LHK_RS09190 (LHK_02027) - 1916707..1917180 (+) 474 WP_012697497.1 PTS sugar transporter subunit IIA -
  LHK_RS09195 (LHK_02028) hprK 1917168..1918127 (+) 960 WP_012697498.1 HPr(Ser) kinase/phosphatase -
  LHK_RS09200 (LHK_02029) rapZ 1918108..1918944 (+) 837 WP_012697499.1 RNase adapter RapZ -
  LHK_RS09205 (LHK_02030) - 1918950..1919327 (+) 378 WP_012697500.1 NusG domain II-containing protein -
  LHK_RS09210 (LHK_02031) - 1919317..1919853 (+) 537 WP_041825640.1 Gx transporter family protein -
  LHK_RS09215 (LHK_02032) - 1919837..1920454 (+) 618 WP_012697502.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53032.65 Da        Isoelectric Point: 4.5772

>NTDB_id=33753 LHK_RS09180 WP_012697495.1 1914724..1916154(+) (rpoN/rpoN1) [Laribacter hongkongensis HLHK9]
MKQSLQLKLSQQLTLTPQLQQSIKLLQLSTLDLQQEVEQFLADNPLLERVEDGEHDDGATAADEPAELAPAEHAGSDDPR
EHDDSARDLDTLNDWSSSGIRGSDEDDDWDPHANLIRPQSLREHLLAQLAEVPLSARDRAVATFLVEEIDDDGYLPASLE
SLAEQLPASLEVELDELTIALRLIQQFEPAGVGARDLTESLLLQLRARSGTDECTLAHTIVRDHLQLLANRDFTRLRRAT
SADDEALRQAQALIASLNPRPAAGFASGDTHYVMADVIVRRDRQGIWQAHLNPASQPRLKVNQMYANLLGRCRGEGGELS
GRLQEAKWLIRNIEQRADTILRVSSVIVERQQGFFEQGELLMKPMVLRDVAEELGLHESTISRVTSNKYLLCPRGIFELK
YFFGSALDTDSGEECSATAIKARIRRLIAEEDARKPLSDNTIADLLGEEGIQVARRTVAKYREALLIPPASQRKMI

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=33753 LHK_RS09180 WP_012697495.1 1914724..1916154(+) (rpoN/rpoN1) [Laribacter hongkongensis HLHK9]
ATGAAACAAAGCCTCCAGCTCAAACTCAGCCAGCAACTCACGCTGACCCCGCAACTGCAACAGTCGATCAAGCTCCTGCA
GCTGTCGACACTGGACTTGCAGCAGGAAGTCGAGCAGTTCCTGGCCGACAATCCCCTGCTGGAGCGTGTCGAAGACGGTG
AACACGATGACGGAGCCACTGCTGCTGACGAACCGGCAGAACTGGCTCCGGCCGAGCACGCCGGCAGCGACGATCCGCGC
GAGCACGATGACAGTGCCCGCGACCTGGACACGCTGAACGACTGGAGCAGCAGCGGCATCCGCGGCAGTGACGAGGACGA
CGACTGGGACCCGCATGCCAACCTGATCCGTCCGCAATCGTTGCGCGAGCACCTGCTGGCACAGCTGGCCGAAGTGCCGC
TGTCGGCCCGCGACCGGGCAGTCGCCACCTTTCTGGTCGAAGAAATCGACGATGATGGCTACCTGCCGGCCTCGCTGGAG
TCACTGGCGGAGCAATTGCCGGCATCGCTGGAAGTGGAACTGGACGAACTGACCATCGCCTTGCGGCTGATCCAGCAGTT
CGAGCCGGCCGGCGTGGGCGCGCGTGACCTGACCGAATCGCTCCTGCTTCAGTTGCGGGCCCGCTCCGGCACCGACGAAT
GCACACTGGCACACACTATCGTGCGTGACCATCTGCAACTGCTGGCCAACCGTGACTTTACCCGCCTGCGCCGCGCCACC
AGTGCCGACGACGAGGCGCTGAGACAGGCCCAGGCGCTGATCGCTTCGCTCAACCCGCGCCCGGCGGCCGGCTTTGCCAG
TGGCGACACACATTACGTCATGGCAGACGTCATCGTGCGGCGCGACCGTCAGGGAATCTGGCAGGCACACTTGAATCCCG
CGTCACAGCCCCGATTAAAGGTGAACCAGATGTACGCCAACCTGCTCGGCCGCTGCCGGGGCGAGGGGGGCGAGCTGTCA
GGACGCCTGCAGGAAGCGAAATGGCTGATCCGCAATATCGAACAACGGGCCGACACTATACTCAGGGTGTCAAGTGTGAT
CGTGGAGCGCCAGCAGGGTTTCTTCGAACAGGGCGAGCTGCTGATGAAACCGATGGTGCTGCGTGATGTTGCAGAGGAAC
TGGGATTGCACGAATCCACCATCTCGCGCGTGACCAGCAACAAATACCTGCTGTGTCCGCGCGGCATTTTCGAGCTGAAG
TATTTTTTCGGATCCGCGCTTGATACGGATTCCGGCGAAGAATGTTCGGCTACGGCCATCAAGGCCCGCATTCGGCGCCT
GATTGCCGAAGAAGACGCCAGAAAGCCGCTTTCAGACAACACCATTGCCGATCTTCTGGGAGAAGAAGGCATCCAGGTTG
CCCGCCGGACCGTGGCGAAATACCGTGAAGCCTTGCTGATCCCCCCCGCCAGCCAGCGCAAGATGATTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(114-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1D969

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.383

100

0.546

Multiple sequence alignment