Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH34_RS08670 Genome accession   NZ_CP035246
Coordinates   1718835..1719866 (-) Length   343 a.a.
NCBI ID   WP_000506410.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901941     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713835..1724866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH34_RS08620 (EQH34_09140) - 1713928..1714689 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  EQH34_RS08625 (EQH34_09145) ytpR 1714722..1715348 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  EQH34_RS08630 (EQH34_09150) - 1715364..1715681 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH34_RS08635 (EQH34_09155) - 1715678..1715977 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH34_RS10435 - 1716071..1716202 (+) 132 WP_001811306.1 hypothetical protein -
  EQH34_RS10655 - 1716314..1716463 (-) 150 Protein_1708 cell wall-binding protein -
  EQH34_RS08650 (EQH34_09165) - 1716669..1717343 (-) 675 WP_000725718.1 LiaF transmembrane domain-containing protein -
  EQH34_RS08655 (EQH34_09170) - 1717348..1717794 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH34_RS08660 (EQH34_09175) - 1717908..1718411 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  EQH34_RS08665 (EQH34_09180) - 1718408..1718770 (-) 363 WP_000078799.1 DUF2200 domain-containing protein -
  EQH34_RS08670 rcrQ 1718835..1719866 (-) 1032 WP_000506410.1 ABC transporter ATP-binding protein Regulator
  EQH34_RS08675 rcrP 1719873..1720694 (-) 822 WP_000601677.1 ABC transporter permease Regulator
  EQH34_RS08680 (EQH34_09190) - 1720711..1721182 (-) 472 Protein_1715 MarR family winged helix-turn-helix transcriptional regulator -
  EQH34_RS08685 (EQH34_09200) - 1721306..1722022 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH34_RS08690 (EQH34_09210) ply 1722903..1724312 (-) 1410 WP_001284355.1 cholesterol-dependent cytolysin pneumolysin -
  EQH34_RS08695 (EQH34_09215) - 1724323..1724733 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37938.21 Da        Isoelectric Point: 4.5257

>NTDB_id=337457 EQH34_RS08670 WP_000506410.1 1718835..1719866(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901941]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQKPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVRFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=337457 EQH34_RS08670 WP_000506410.1 1718835..1719866(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901941]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAAACCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGATTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

79.911

65.306

0.522
  rcrP Streptococcus mutans UA159

37.283

100

0.376

Multiple sequence alignment