Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQH34_RS08375 Genome accession   NZ_CP035246
Coordinates   1676257..1676967 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain TVO_1901941     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1671257..1681967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH34_RS08360 (EQH34_08870) - 1671798..1672046 (-) 249 WP_000364990.1 YneF family protein -
  EQH34_RS08365 (EQH34_08875) treC 1672302..1673927 (-) 1626 WP_000171221.1 alpha,alpha-phosphotrehalase -
  EQH34_RS08370 (EQH34_08885) treP 1674105..1676072 (-) 1968 WP_000514301.1 PTS system trehalose-specific EIIBC component -
  EQH34_RS08375 (EQH34_08890) treR 1676257..1676967 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH34_RS08380 (EQH34_08900) - 1677122..1678448 (+) 1327 Protein_1677 ISL3 family transposase -
  EQH34_RS08385 (EQH34_08905) amiF 1678523..1679449 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  EQH34_RS08390 (EQH34_08910) amiE 1679460..1680527 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  EQH34_RS08395 (EQH34_08915) amiD 1680536..1681462 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=337450 EQH34_RS08375 WP_000760673.1 1676257..1676967(+) (treR) [Streptococcus pneumoniae strain TVO_1901941]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=337450 EQH34_RS08375 WP_000760673.1 1676257..1676967(+) (treR) [Streptococcus pneumoniae strain TVO_1901941]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment