Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SOR_RS07245 Genome accession   NC_015291
Coordinates   1431249..1433465 (-) Length   738 a.a.
NCBI ID   WP_041170869.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1426249..1438465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS07220 (SOR_1478) - 1426396..1427175 (-) 780 WP_000290049.1 alpha/beta hydrolase -
  SOR_RS07225 (SOR_1479) - 1427245..1428906 (-) 1662 WP_000065641.1 ribonuclease J -
  SOR_RS07235 (SOR_1480) - 1429416..1430063 (-) 648 WP_000754475.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  SOR_RS07240 (SOR_1481) - 1430422..1431243 (-) 822 WP_013670262.1 hypothetical protein -
  SOR_RS07245 (SOR_1482) recJ 1431249..1433465 (-) 2217 WP_041170869.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SOR_RS07250 (SOR_1483) - 1433643..1434401 (+) 759 WP_001229582.1 amino acid ABC transporter ATP-binding protein -
  SOR_RS07255 (SOR_1484) - 1434412..1435206 (+) 795 WP_000726174.1 transporter substrate-binding domain-containing protein -
  SOR_RS07260 (SOR_1485) - 1435219..1435896 (+) 678 WP_000131152.1 amino acid ABC transporter permease -
  SOR_RS07265 (SOR_1486) - 1435906..1436565 (+) 660 WP_000443846.1 amino acid ABC transporter permease -
  SOR_RS07270 (SOR_1487) - 1436733..1437170 (-) 438 WP_001167394.1 Rrf2 family transcriptional regulator -
  SOR_RS07275 (SOR_1488) - 1437337..1438278 (-) 942 WP_000801525.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 82268.66 Da        Isoelectric Point: 4.3278

>NTDB_id=33736 SOR_RS07245 WP_041170869.1 1431249..1433465(-) (recJ) [Streptococcus oralis Uo5]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLVVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETIGFQLAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEEGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFSQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFSGELPDLANSEAVVVKTIPEDITLLKTIFQEQDFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKETPKREIAESQIYQNLKQTVKD
QEMMALGTVQEMYDFLKG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=33736 SOR_RS07245 WP_041170869.1 1431249..1433465(-) (recJ) [Streptococcus oralis Uo5]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCACAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGCCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGAATGAAGAAAGTCTAAAGAAGTTTTTAGAACCTT
CTTTAGAGGACTTGCATGACCCTTATCTGCTCCATGATATGGATAAGGCAGTAGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAACATTCTCATCTATGGGGACTACGATGCGGATGGCATGACTTCAGCGTCGATTGTGAAGGAAAGTTTGGAACA
GCTGGGCGCCGAGTGCCGTGTTTATCTGCCAAATCGCTTTACCGATGGCTACGGTCCTAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCCTGGTTGTGACAGTGGATAATGGGGTTGCAGGGCACGAAGCCATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACCGACCACCATTCCATGCCGGAAACCCTTCCTGATGCCTATGCGATTGTTCACCC
TGAGCATCCGGATGCGGACTATCCTTTTAAACAGTTGGCTGGTTGCGGAGTGGCTTTCAAGCTGGCTTGCGCTCTTTTAG
AAGAAGTACAAGTGGAGTTGCTTGATTTGGTTGCCATCGGAACCATTGCCGATATGGTGAGTCTGACGGATGAAAATCGT
ATCTTGGTTCAATATGGTCTGGAAATGTTGGGACATACCCAGCGCATTGGACTACAAGAAATGCTGGACATGGCTGGGAT
TGCTGCTAATGAAGTAACAGAAGAAACGATTGGTTTCCAGCTTGCACCGCGTTTGAATGCTTTGGGGCGTTTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGATTTGATGATGAGGAAGCGCATGAGATTGCCCTCATGATTCACCAGAAAAAC
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTACGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTTGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGAAGGTCGCGCCAAGGGTAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCTCTGGATCCC
CATCGAGACCTCTTTATCGCCTTTGGCGGCCATGCTGGTGCAGCTGGAATGACGCTGGAAGTTGAGAAACTTTCAGATTT
ATCTCAGGTTTTAGAAGACTATGTCCGTGAAAAAGGTGCAGATGCTGGTGGCAAGAATAAGTTAAATCTAGATGAAGAGT
TGGATTTGGAGACTCTTAGTTTAGAAACGGTTAAAAGCTTTGAACGCTTGGCACCCTTTGGGATGGATAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCATGTCGAAAGTGCCAGAACCATGGGAGCAGGCAATGCCCACCTCAAACTAAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCAACAGAATTTTCTCAAACCAAGAATCTAG
AATTGGCAGTCACCCTGTCTGTCAATCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGTGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGATTTCTCTGGAGAATT
GCCGGATTTGGCGAATAGTGAAGCGGTTGTTGTGAAAACTATTCCCGAGGATATTACCTTGCTTAAGACCATTTTTCAGG
AACAGGATTTCTCTGCTGTCTATTTCAAAAATGACATCGATAAGGCCTACTATCTGACAGGTTATGGGACTAGGGAACAG
TTTGCAAAATTGTACAAGACCATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTGAAAGATTTGGCGGCTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATCCAAGTATTTGAAGAGCTGGGCTTTGTGACAATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAACGCCGAAAAGGGAAATTGCTGAAAGTCAGATTTACCAAAATCTCAAACAGACCGTTAAAGAC
CAAGAAATGATGGCACTGGGGACAGTGCAAGAAATGTATGACTTTTTGAAAGGATAA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

96.332

99.729

0.961
  recJ Bacillus subtilis subsp. subtilis str. 168

36.658

100

0.383

Multiple sequence alignment