Detailed information NTG0033727

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DEIDE_RS04960
• Genome accession: NC_012526
• Coordinates: 1047003..1048223 (-)
• Length: 406 a.a.
• NCBI ID: WP_012692855.1
• Uniprot ID: C1D1K8
• Organism: Deinococcus deserti VCD115
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1042003..1053223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIDE_RS04945 (Deide_08560)	-	1042831..1043724 (-)	894	WP_012692852.1	EamA family transporter	-
DEIDE_RS04950 (Deide_08570)	glgP	1043800..1046316 (-)	2517	WP_012692853.1	alpha-glucan family phosphorylase	-
DEIDE_RS04955 (Deide_08580)	-	1046414..1046881 (+)	468	WP_012692854.1	hypothetical protein	-
DEIDE_RS04960 (Deide_08590)	pilC	1047003..1048223 (-)	1221	WP_012692855.1	type II secretion system F family protein	Machinery gene
DEIDE_RS04965 (Deide_08591)	-	1048291..1048935 (+)	645	WP_012692856.1	L-threonylcarbamoyladenylate synthase	-
DEIDE_RS04970 (Deide_08600)	scpB	1048932..1049477 (+)	546	WP_012692857.1	SMC-Scp complex subunit ScpB	-
DEIDE_RS04975 (Deide_08610)	-	1049567..1050334 (+)	768	WP_012692858.1	DUF4388 domain-containing protein	-
DEIDE_RS04980 (Deide_08620)	gatA	1050422..1051885 (+)	1464	WP_012692859.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
DEIDE_RS04985 (Deide_08630)	truB	1051886..1052818 (-)	933	WP_012692860.1	tRNA pseudouridine(55) synthase TruB	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44286.40 Da
• Isoelectric Point: 9.6382

>NTDB_id=33727 DEIDE_RS04960 WP_012692855.1 1047003..1048223(-) (pilC) [Deinococcus deserti VCD115]
MPVFEYRARDRSGTVLKSQMEAETAAQVRDILRSKSLMILEIKPPKSGLNADINIPFLNNRPPGLKPVAIFSKQLATLIN
AGVPLVQSLAILQKQIEHKGFQKVVKDLRGDVESGIPLSEAIAKYPKIFDRLYVNLIRAGETSGTLDAILERIASFQEKD
LALRGKIKSAMTYPVIVLIFALGITYFLLTTIVPQFGMILVQLNAPLPFITKMLMAVSDFLKSSTWVIALVVTALVYAYR
AIYKTPKGRMQIDKIKLRIPVFGNLIQKSAISSFARTLGLLLSSGVNIIESLEITKGTANNAVVEETLDNAKNVVMVGEQ
MSSSLGASKVFPPMVVSMISIGEETGSLDSMLDKVGDFYDREVDEAVDAMTAAIEPLMIVFLGVIIGTIVAGMFLPMFSI
IGALSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=33727 DEIDE_RS04960 WP_012692855.1 1047003..1048223(-) (pilC) [Deinococcus deserti VCD115]
ATGCCCGTCTTTGAATACCGCGCACGCGACCGCTCCGGCACTGTGCTGAAATCACAGATGGAGGCAGAGACGGCCGCTCA
GGTCCGTGACATCTTGCGGTCCAAGAGCCTCATGATCCTCGAGATCAAGCCGCCCAAGAGCGGCCTGAACGCCGATATCA
ACATTCCCTTCCTGAATAACCGCCCGCCAGGACTCAAGCCGGTGGCTATTTTCAGCAAACAGCTTGCCACGCTGATCAAC
GCCGGAGTCCCGCTGGTGCAGTCACTGGCTATTCTGCAAAAGCAGATCGAGCATAAGGGCTTTCAGAAGGTTGTCAAGGA
CCTGCGCGGGGACGTCGAGTCGGGGATCCCGCTGAGCGAGGCCATCGCCAAGTACCCCAAAATCTTTGATCGCCTGTATG
TCAACCTGATTCGTGCCGGTGAAACGAGTGGCACGCTTGACGCCATCCTCGAGCGGATTGCAAGCTTCCAGGAAAAGGAT
CTGGCCCTGCGCGGCAAGATCAAGAGTGCGATGACCTATCCGGTAATTGTGCTTATTTTTGCACTGGGCATCACCTACTT
CCTGCTGACGACCATCGTGCCGCAGTTCGGGATGATTCTGGTTCAGCTCAACGCTCCACTGCCATTCATCACAAAAATGC
TGATGGCCGTGTCGGACTTCCTGAAAAGTTCTACCTGGGTCATTGCCCTTGTCGTCACAGCACTCGTTTATGCCTACCGT
GCCATTTACAAAACCCCCAAGGGCCGAATGCAGATCGACAAGATCAAACTCAGGATTCCTGTCTTCGGCAACCTGATCCA
GAAAAGTGCCATCAGCTCATTTGCACGGACACTCGGCCTGCTGCTCAGCAGTGGGGTCAACATTATCGAGAGTCTGGAGA
TCACGAAGGGGACGGCAAACAATGCAGTGGTTGAGGAGACCCTGGACAATGCCAAGAACGTAGTGATGGTTGGTGAACAG
ATGAGTTCAAGTCTTGGGGCCAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGATTTCCATTGGTGAAGAAACCGGCTC
CCTGGATTCGATGCTCGACAAGGTCGGAGACTTCTACGACCGCGAAGTCGACGAAGCCGTCGACGCCATGACTGCAGCTA
TCGAACCCCTGATGATCGTTTTCCTGGGGGTCATCATCGGCACAATCGTGGCTGGGATGTTCCTCCCCATGTTCAGCATT
ATTGGCGCCCTCAGCCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

3D structure

• AlphaFold DB: C1D1K8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	58.867	100	0.589