Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DEIDE_RS01695 Genome accession   NC_012526
Coordinates   334234..334770 (-) Length   178 a.a.
NCBI ID   WP_012692241.1    Uniprot ID   C1CZ80
Organism   Deinococcus deserti VCD115     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329234..339770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIDE_RS01670 (Deide_02950) - 329787..330362 (+) 576 WP_041226981.1 DinB family protein -
  DEIDE_RS01675 (Deide_02960) rocF 330533..331432 (-) 900 WP_012692237.1 arginase -
  DEIDE_RS01680 (Deide_02970) - 332010..332648 (+) 639 WP_012692238.1 metallophosphoesterase family protein -
  DEIDE_RS01685 (Deide_02971) - 333267..333653 (+) 387 WP_041226982.1 hypothetical protein -
  DEIDE_RS01690 (Deide_02980) - 333768..334196 (+) 429 WP_012692240.1 hypothetical protein -
  DEIDE_RS01695 (Deide_02990) ddrB 334234..334770 (-) 537 WP_012692241.1 single-stranded DNA-binding protein Machinery gene
  DEIDE_RS01700 (Deide_03000) - 334859..335623 (-) 765 WP_242402936.1 acyl-CoA acyltransferase -
  DEIDE_RS01705 (Deide_03010) menC 335659..336771 (-) 1113 WP_012692243.1 o-succinylbenzoate synthase -
  DEIDE_RS01715 (Deide_03020) - 338768..339022 (+) 255 WP_012692244.1 acyl-CoA-binding protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19744.20 Da        Isoelectric Point: 7.0767

>NTDB_id=33722 DEIDE_RS01695 WP_012692241.1 334234..334770(-) (ddrB) [Deinococcus deserti VCD115]
MLHIEFLTDLGAKVTVDVEHENQLLDVQRHYGRLGWTSGAVPTGGYQFPLDNEPDFDWSLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKFSRGAKSTDPEHLREKADGEFEYVTLAIFRGGKRQERYAVPGGARPAAQSARPAPARA
QAAARPAPVAVVDEETPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=33722 DEIDE_RS01695 WP_012692241.1 334234..334770(-) (ddrB) [Deinococcus deserti VCD115]
ATGTTGCATATAGAATTCCTGACCGACCTCGGGGCCAAAGTGACGGTGGACGTCGAGCACGAAAACCAGTTACTTGATGT
CCAGCGCCATTACGGGCGTCTGGGCTGGACCAGCGGAGCGGTTCCCACAGGGGGTTACCAGTTTCCCCTGGACAATGAAC
CCGACTTCGACTGGAGCCTGATCGGCGCCCGTAAATGGACCAGCCCCGACGGTGAGGAACTGGTTATCCACAAGGGTCAC
GCTTACCGCCGCCGCGAACTGGAAGCGGTCGACAGCCGCAAGATGAAACTTCCCGCTGCCGTCAAGTTCTCGCGGGGAGC
CAAGAGCACCGATCCTGAGCACCTGCGGGAGAAGGCCGACGGCGAGTTCGAGTACGTCACTCTGGCTATCTTCCGTGGCG
GAAAACGCCAGGAGCGTTACGCCGTGCCTGGCGGTGCCCGTCCGGCAGCTCAGTCTGCCCGCCCCGCCCCGGCCCGGGCT
CAGGCTGCCGCCCGGCCGGCTCCGGTGGCTGTCGTCGACGAAGAGACCCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CZ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

71.958

100

0.764

Multiple sequence alignment