Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH37_RS02610 Genome accession   NZ_CP035243
Coordinates   510993..511724 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901946     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 505993..516724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH37_RS02585 (EQH37_02745) dnaK 506248..508071 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  EQH37_RS02590 (EQH37_02750) - 508082..508429 (+) 348 WP_054407072.1 hypothetical protein -
  EQH37_RS02595 (EQH37_02755) dnaJ 508702..509838 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EQH37_RS02600 (EQH37_02760) - 510218..510505 (-) 288 WP_000777753.1 hypothetical protein -
  EQH37_RS02605 (EQH37_02765) - 510515..510925 (-) 411 WP_001278301.1 HIT family protein -
  EQH37_RS02610 (EQH37_02770) pptA 510993..511724 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH37_RS02615 (EQH37_02775) - 511721..512770 (+) 1050 WP_054407074.1 ABC transporter permease -
  EQH37_RS02620 (EQH37_02780) - 512938..513267 (-) 330 WP_047499345.1 hypothetical protein -
  EQH37_RS02625 (EQH37_02785) - 513544..513882 (+) 339 WP_000682137.1 LytTR family DNA-binding domain-containing protein -
  EQH37_RS02630 (EQH37_02790) comE/blpR 513887..514624 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH37_RS02635 (EQH37_02795) - 514638..515978 (+) 1341 WP_001099892.1 sensor histidine kinase -
  EQH37_RS02640 (EQH37_02800) blpC 516022..516177 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=337191 EQH37_RS02610 WP_000889923.1 510993..511724(+) (pptA) [Streptococcus pneumoniae strain TVO_1901946]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=337191 EQH37_RS02610 WP_000889923.1 510993..511724(+) (pptA) [Streptococcus pneumoniae strain TVO_1901946]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment