Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SOR_RS04855 Genome accession   NC_015291
Coordinates   969719..970789 (-) Length   356 a.a.
NCBI ID   WP_000817865.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964719..975789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS04835 (SOR_0989) - 964919..965962 (+) 1044 WP_000752727.1 dihydrolipoamide acetyltransferase -
  SOR_RS04840 (SOR_0990) lpdA 966007..967710 (+) 1704 WP_001162904.1 dihydrolipoyl dehydrogenase -
  SOR_RS04845 (SOR_0991) - 967906..968895 (+) 990 WP_000873982.1 lipoate--protein ligase -
  SOR_RS04850 (SOR_0992) - 968999..969640 (+) 642 WP_000890070.1 hypothetical protein -
  SOR_RS04855 (SOR_0993) xerS 969719..970789 (-) 1071 WP_000817865.1 tyrosine recombinase XerS Machinery gene
  SOR_RS04860 (SOR_0994) - 970929..971219 (-) 291 WP_001148765.1 hypothetical protein -
  SOR_RS04865 (SOR_0995) - 971200..971592 (-) 393 WP_000439962.1 hypothetical protein -
  SOR_RS04870 (SOR_0996) - 971574..972818 (-) 1245 WP_000263210.1 hypothetical protein -
  SOR_RS04875 (SOR_0997) - 972818..973249 (-) 432 WP_001066116.1 hypothetical protein -
  SOR_RS04880 (SOR_0999) - 973354..973779 (-) 426 WP_001027476.1 hypothetical protein -
  SOR_RS04885 (SOR_1000) - 973884..974306 (-) 423 WP_001027474.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41217.29 Da        Isoelectric Point: 9.6031

>NTDB_id=33718 SOR_RS04855 WP_000817865.1 969719..970789(-) (xerS) [Streptococcus oralis Uo5]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMVDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKSYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=33718 SOR_RS04855 WP_000817865.1 969719..970789(-) (xerS) [Streptococcus oralis Uo5]
ATGAAACGTGAGATTTTACTAGAGCGAATCGACAAACTAAAACAAATAATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTGCCCTACAGTTTTACAACCTTATACGAATACCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTGG
AGTCTGGAATCTCAAATGCGGATAAAATGGTCGATATTCCTTTATCGGTCTTGGAAAATATGTCTAAAAAAGACATGGAG
TCCTTTATTCTATATCTTCGTGAACGACCTTTGCTGAATGCTAATACAACTAAACAAGGTGTCTCTCAGACAACAATCAA
TCGCACTTTGTCAGCACTATCTAGTCTTTACAAGTATCTAACCGAGGAAGTCGAAAACGACCAGGGGGAGCCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTGACTTATATTGACCAAGAGTACCCACAACAACTCTCAAATCGTGCTCT
CTCGTCATTCAATAAAAATAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCCTATCTGAAG
CTGTTAATCTGGATCTAAGAGACCTTAATCTCAAAATGATGGTCATTGATGTCACTCGAAAAGGGGGCAAACGTGATTCT
GTCAATGTCGCAGCCTTTGCCAAGTCTTACCTTGAAAATTATCTCGCCATTCGAAATCAACGCTATAAGACGGAAAAAAC
AGATACAGCGCTCTTTCTGACCTTATATCGTGGTGTTCCCAATCGTATCGATGCTTCCAGCGTCGAGAAAATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCCCACAAACTACGGCATACCCTGGCAACTAGGCTCTATGATGCAACT
AAATCGCAAGTTTTGGTCAGCCATCAGTTAGGTCATGCTAGCACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986