Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   EQH38_RS07240 Genome accession   NZ_CP035242
Coordinates   1399600..1400250 (-) Length   216 a.a.
NCBI ID   WP_000387336.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1394600..1405250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS07220 (EQH38_07610) - 1395208..1396389 (-) 1182 WP_000655951.1 membrane protein -
  EQH38_RS07225 (EQH38_07615) - 1396393..1396980 (-) 588 WP_000933542.1 ATP-binding cassette domain-containing protein -
  EQH38_RS07230 (EQH38_07620) - 1397012..1397200 (-) 189 WP_001809102.1 hypothetical protein -
  EQH38_RS07235 (EQH38_07625) comEC/celB 1397379..1399616 (-) 2238 WP_238097306.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EQH38_RS07240 (EQH38_07630) comEA/celA/cilE 1399600..1400250 (-) 651 WP_000387336.1 ComEA family DNA-binding protein Machinery gene
  EQH38_RS07245 (EQH38_07635) - 1400318..1400887 (-) 570 WP_000443749.1 GNAT family N-acetyltransferase -
  EQH38_RS07250 (EQH38_07640) ald 1401064..1402174 (+) 1111 Protein_1412 alanine dehydrogenase -
  EQH38_RS07255 (EQH38_07645) - 1402428..1402802 (-) 375 Protein_1413 TfoX/Sxy family protein -
  EQH38_RS07260 (EQH38_07650) - 1402805..1403305 (-) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  EQH38_RS07265 (EQH38_07660) - 1403498..1404466 (-) 969 WP_000658191.1 PhoH family protein -
  EQH38_RS07270 (EQH38_07665) - 1404552..1404767 (-) 216 WP_001232082.1 YozE family protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23189.54 Da        Isoelectric Point: 5.5171

>NTDB_id=337151 EQH38_RS07240 WP_000387336.1 1399600..1400250(-) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901947]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPVEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=337151 EQH38_RS07240 WP_000387336.1 1399600..1400250(-) (comEA/celA/cilE) [Streptococcus pneumoniae strain TVO_1901947]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGCGGATT
TTTCCTGCTAAAGCCAGCTCCACAAACACCTGTAAAGGAAACGAATTTGCAGGCTGAAGTTGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCAGTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(76-126)

(151-214)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

99.074

100

0.991

  comEA/celA/cilE Streptococcus pneumoniae D39

99.074

100

0.991

  comEA/celA/cilE Streptococcus pneumoniae R6

99.074

100

0.991

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

95.833

100

0.958

  comEA/celA/cilE Streptococcus mitis SK321

91.204

100

0.912

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366

  comEA Latilactobacillus sakei subsp. sakei 23K

33.476

100

0.361


Multiple sequence alignment